View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19567_low_7 (Length: 399)
Name: NF19567_low_7
Description: NF19567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19567_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 138 - 380
Target Start/End: Original strand, 36883000 - 36883242
Alignment:
| Q |
138 |
atataaaagtttgagtattgtgcattactcaaattttatctcttccattgaaaatatttaaatatatatgttggttcatttgcnnnnnnnnnnnnacctt |
237 |
Q |
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| T |
36883000 |
atataaaagtttgagtattgtgcactactcaaattttatctcttccaatgaaaatgtttgaatatatatgttggttcatttgctttttcttttttacctt |
36883099 |
T |
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| Q |
238 |
ggagcagtatatcaaaagtcttgtaccacaacacttctactttagaagcaacaacaagggaaaaacatcaagtgaaattttcaagacaacacacgaaaat |
337 |
Q |
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| T |
36883100 |
ggagcagtatatcaaaagccttgtaccacaacacttctactttagaagcaacaacaagggcaaaacatcaagtgaaattttcaagacaacacacgaaaat |
36883199 |
T |
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| Q |
338 |
cttatacaagagagcagcagttggctaaaagacacgtcagaat |
380 |
Q |
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| T |
36883200 |
cttatacaagagagcagcagttggctaaaagacacgtcagaat |
36883242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 372
Target Start/End: Original strand, 36893101 - 36893237
Alignment:
| Q |
236 |
ttggagcagtatatcaaaagtcttgtaccacaacacttctactttagaagcaacaacaagggaaaaacatcaagtgaaattttcaagacaacacacgaaa |
335 |
Q |
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| T |
36893101 |
ttggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaag |
36893200 |
T |
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| Q |
336 |
atcttatacaagagagcagcagttggctaaaagacac |
372 |
Q |
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| T |
36893201 |
gtcttataaaagacagtagcgaatggctaaaagacac |
36893237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 36882914 - 36882957
Alignment:
| Q |
4 |
tgattttagaaacttccatgaagcaaaagttttactaaaatgtt |
47 |
Q |
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| T |
36882914 |
tgatttgagaaacttccatgaagcaaaagttttactaaaatgtt |
36882957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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