View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19567_low_8 (Length: 377)
Name: NF19567_low_8
Description: NF19567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19567_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 6316544 - 6316193
Alignment:
| Q |
9 |
agcagagatctgaatgtagataactaataaaaccatcggtaataaacaaccttatgttgcaagatatgtacaaaacggtggctcattttttaactaatat |
108 |
Q |
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| T |
6316544 |
agcagagatctgaatgtagataactaataaaaccatcggtaataaacaaccttatgttgcaagatatgtacaaaacggtggctcattttttaactaatat |
6316445 |
T |
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| Q |
109 |
ggttggataaatcattttaattgtgatttatgtgttgatttcatgcctctgccttgagtgtaatgtccattttgtgtatttagtatgatggaggaactag |
208 |
Q |
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| T |
6316444 |
ggttggataaatcattttaattgtgatttatgtgttgatttcatgcctctgccttgagtgtaatgtccattttgtgtatttagtatgatggaggaactag |
6316345 |
T |
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| Q |
209 |
ctttacacaaagtattgtgatgatatttttgtcgttccggatatgtctattttgaatgtttgcatctctttcctatttgtttttgttcatctttaatggg |
308 |
Q |
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| T |
6316344 |
ctttacacaaagtattgtgatgatatttttgtcgttccggatatgtctattttgaatgtttgcatctctttcctatttgtttttgttcatctttaatggg |
6316245 |
T |
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| Q |
309 |
gttatatgtgtaaatggaaaactcaatattatataaattctataaaggaaag |
360 |
Q |
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| T |
6316244 |
gttatatgtgtaaatggaaaactcaatattatataaattctataaaggaaag |
6316193 |
T |
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