View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19567_low_9 (Length: 317)
Name: NF19567_low_9
Description: NF19567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19567_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 24370367 - 24370081
Alignment:
| Q |
18 |
cttttcccaatcagcagcatcacatttgtgtccttgttatcaataaccccttttaaatctggtacagactgcatagtatg--atactattatcaatcatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24370367 |
cttttcccaatcagcagcatcacatttgtgtccttgttctcaataaccccttttaaatctggtacagactgcatagtatataatactattatcaatcatc |
24370268 |
T |
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| Q |
116 |
ataatttataatcgcagcataaatgaatatatgtagtaaaaattgtgtttgtgcatcctacccgagtatgttctaccagattaattggcttgatgagaat |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24370267 |
ataatttataatcacagcataaatgaatatatgtagtaaaaattgtgtttgtgcatcctacccgagtatgttctaccagattaattggcttgatgagaat |
24370168 |
T |
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| Q |
216 |
tgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttctttt |
302 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24370167 |
tgtgaaaaatggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattcattgatgaagttctttt |
24370081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 24364176 - 24364295
Alignment:
| Q |
18 |
cttttcccaatcagcagcatcacatttgtgtccttgttatcaataaccccttttaaatctggtacagactgcatagtatgatactattatcaatcatcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24364176 |
cttttcccaatcagcagcatcacatttgtgtccttgttctcaataaccccttttaaatctggtacagactgcatagtataatactattatcaatcatcat |
24364275 |
T |
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| Q |
118 |
aatttataatcgcagcataa |
137 |
Q |
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| T |
24364276 |
aacttataatcacagcataa |
24364295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 302
Target Start/End: Complemental strand, 24358857 - 24358763
Alignment:
| Q |
208 |
atgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttctttt |
302 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24358857 |
atgagaattgtgaaaaaaggattgtttgagatgaaattttgagctactttctgagctctaacatcctttggccaatttattgatgaagttctttt |
24358763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 24355759 - 24355694
Alignment:
| Q |
202 |
ggcttgatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctcta |
267 |
Q |
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| T |
24355759 |
ggcttgatgagaattgtgaaaaaaggattgcatgagatgaaattttgagctacttcctgagctcta |
24355694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 302
Target Start/End: Original strand, 24364404 - 24364498
Alignment:
| Q |
208 |
atgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttctttt |
302 |
Q |
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||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||| || ||||||||||||||||| |
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| T |
24364404 |
atgagaactgtaaagaaaggattgcatgagatgaaattttgagctacttcctgagctctagcattcttcggccagtttattgatgaagttctttt |
24364498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 208 - 301
Target Start/End: Complemental strand, 24346651 - 24346558
Alignment:
| Q |
208 |
atgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttcttt |
301 |
Q |
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|||||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||| | ||||||||||||| ||||| |||||||| |
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| T |
24346651 |
atgagaattgtgaaaaaaggattggttgagatgaattttaaagctacttcctgagctctagctccctttggccaattccatgatgtagttcttt |
24346558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 301
Target Start/End: Complemental strand, 24362642 - 24362527
Alignment:
| Q |
186 |
ttctaccagattaattggcttgatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattg |
285 |
Q |
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||||||||||| | | ||||| ||||||||||||||||||||||||| ||||||||| ||| ||| ||||| |||||||| | || | |||||||| |
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| T |
24362642 |
ttctaccagatgattaggctttatgagaattgtgaaaaaaggattgcttgagatgaattttgcagctacttctcgagctctagctcccataggccaattc |
24362543 |
T |
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| Q |
286 |
attgatgaagttcttt |
301 |
Q |
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| T |
24362542 |
aatgatgtagttcttt |
24362527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 24355960 - 24355839
Alignment:
| Q |
18 |
cttttcccaatcagcagcatcacatttgtgtccttgttatcaataaccccttttaaatctggtacagactgcata--gtatgatactattatcaatcatc |
115 |
Q |
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|||||||||||| | |||||||||| | || ||||| |||||||||||||| |||| ||||||| ||||||| |||| ||| ||||||||||||| |
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| T |
24355960 |
cttttcccaatctgaagcatcacatccttctctttgttctcaataacccctttaaaatttggtacattctgcatatggtataatagtattatcaatcata |
24355861 |
T |
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| Q |
116 |
ataatttataatcgcagcataa |
137 |
Q |
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|||||||||||| || ||||| |
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| T |
24355860 |
ttaatttataatcacaacataa |
24355839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 24346853 - 24346776
Alignment:
| Q |
18 |
cttttcccaatcagcagcatcacatttgtgtccttgttatcaataaccccttttaaatctggtacagactgcatagta |
95 |
Q |
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|||||||||||| |||||||||||| | || ||||| ||||||||||| |||||| ||||||| ||||||||||| |
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| T |
24346853 |
cttttcccaatctgcagcatcacatacttttctttgttctcaataaccccatttaaagttggtacacactgcatagta |
24346776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 24359256 - 24359177
Alignment:
| Q |
51 |
ttgttatcaataaccccttttaaatct---ggtacagactgcatagtatgatactattatcaatcatcataatttataat |
127 |
Q |
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||||| ||||||| ||||||||||||| |||||| ||||||||| || |||||||||||||||| ||||| |||||| |
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| T |
24359256 |
ttgttctcaataatcccttttaaatctaaaggtacaaactgcatagcataatactattatcaatcactataatatataat |
24359177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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