View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19568_low_3 (Length: 470)
Name: NF19568_low_3
Description: NF19568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19568_low_3 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 22071952 - 22071501
Alignment:
| Q |
1 |
agacattattgtacgattgtgcaaaatgttggatgagcataatgttcatgcaaagtatttcaggatggcacgtgatatcttaaagggaggacacatgcat |
100 |
Q |
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| T |
22071952 |
agacattgttgtacgattgtgcaaaatgttggatgagcataatgttcatgcaaagtctttcaggatggcacgtgatatcttaaagggaggacacatgaat |
22071853 |
T |
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| Q |
101 |
gatttgaaattaagactaatatcggaaaggaaatctgatggtaggatttacaatgaacctacggtctccgaagttgctgctttcatagtaggtgatgttg |
200 |
Q |
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| T |
22071852 |
gatttgaaattaagacttatatcggaaagtaaatctgatgataggatttacaatgaacctacggtctccgaagttgctgctttcatagtaggtgatgttg |
22071753 |
T |
|
| Q |
201 |
atactgccgataaaagagatataattttgcatcaaactaatgatcagctccaaaggattgatgaatttcatgctgcttatttaagttaccagtatccctt |
300 |
Q |
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| T |
22071752 |
atactgccgataaaagagatatcattttgcatcaaactaatggtcagctccaaatgattgatgaatttcatgctgcatatttaagttaccagtatccctt |
22071653 |
T |
|
| Q |
301 |
gattttcccttatggtgaagatggttatagagatggtatattgcataagtatagagctgaagtgatagtcac--nnnnnnnnntcgtctcactataaaag |
398 |
Q |
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| T |
22071652 |
gattttcccttatggtgaagatggttatagagatggtatattgcataagtatagagctgaagtgatagtcacaaaaaaaaaaatcgtctcattataaaag |
22071553 |
T |
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| Q |
399 |
agtggttttcattccgtattcaaagcaggaaaggagaagctcggactctcct |
450 |
Q |
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| T |
22071552 |
agtggttttcattccgcattcaaagcaggaaaggagaggctcggactctcct |
22071501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 118032 - 117583
Alignment:
| Q |
1 |
agacattattgtacgattgtgcaaaatgttggatgagcataatgttcatgcaaagtatttcaggatggcacgtgatatcttaaagggaggacacatgcat |
100 |
Q |
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||||||| |||||| ||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||| |
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| T |
118032 |
agacattgttgtacaattgtgcaaaatgctagatgaatttaatgttcatgcaaagtcattcaggatggcacgtgatattttaaaaggaggacacattcat |
117933 |
T |
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| Q |
101 |
gatttgaaattaagactaatatcggaaaggaaatctgatggtaggatttacaatgaacctacggtctccgaagttgctgctttcatagtaggtgatgttg |
200 |
Q |
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| T |
117932 |
gatttgaaaatcaaacttatatcagaaaggaaatctgatggaaggatttacaatgaaccgacagtatcagaagttgctgctttcatagtaggtgatgttg |
117833 |
T |
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| Q |
201 |
atactgccgataaaagagatataattttgcatcaaactaatgatcagctccaaaggattgatgaatttcatgctgcttatttaagttaccagtatccctt |
300 |
Q |
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| T |
117832 |
atgcggccgataaaagagatatcattctgcaccaaactaatggtcaactccagagaattgatgagttccacgctgcttatttgaggtaccaatatccact |
117733 |
T |
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| Q |
301 |
gattttcccttatggtgaagatggttatagagatggtatattgcataagtatagagctgaagtgatagtcacnnnnnnnnntcgtctcactataaaagag |
400 |
Q |
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| T |
117732 |
aatattcccctatggtgaagatggttacagagatggtatattgcataaatacagagctgaggtgaaagtcaccaagaaaaatcgtctcactataaaagaa |
117633 |
T |
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| Q |
401 |
tggttttcattccgtattcaaagcaggaaaggagaagctcggactctcct |
450 |
Q |
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| T |
117632 |
tggttctcattcaggattcaaagcagaaatggagaggctagaactctcct |
117583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 26223955 - 26224046
Alignment:
| Q |
135 |
ctgatggtaggatttacaatgaacctacggtctccgaagttgctgctttcatagtaggtgatgttgatactgccgataaaagagatataatt |
226 |
Q |
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| T |
26223955 |
ctgatggaaggatttataatcaacctactgtctccgaagtagcagctttgatagtaggtgatgttgactctgcagcaagaagagatataatt |
26224046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 33543519 - 33543610
Alignment:
| Q |
135 |
ctgatggtaggatttacaatgaacctacggtctccgaagttgctgctttcatagtaggtgatgttgatactgccgataaaagagatataatt |
226 |
Q |
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| T |
33543519 |
ctgatggaaggatttataatcaacctactgtctctgaagtagcagctttgatagtaggtgatgttgactctgcagcaagaagagatataatt |
33543610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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