View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19569_low_1 (Length: 472)
Name: NF19569_low_1
Description: NF19569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19569_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 381
Target Start/End: Complemental strand, 13707228 - 13706857
Alignment:
| Q |
9 |
attattctagagaatgtgatatgaaaattttcaacgagttcattgatggttttaggtttatagattccctcctaaatggtggaaggtcacacttttcaag |
108 |
Q |
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| T |
13707228 |
attattctagaaagtgtgatatgaaaattttcaacgagttcattgatggttttatgtttatagattccttcctaaatggtggaaggtcacacttttcagt |
13707129 |
T |
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| Q |
109 |
atttgtaagtgacaggccgacatgaaattaaatcccgatcatgaattaaacctacaaagaagagacgttaatttttatgacattgagaataacacatttt |
208 |
Q |
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| T |
13707128 |
atttgtaagtgac-gaccgacatgaaattaaatcccgatcatgaattaaacctacaaagaagagacgttaatttttatgacattgagaataacacatttt |
13707030 |
T |
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| Q |
209 |
agtaaaacatattatgattctacttgtctaaaatctgaaatcactagaaaaattatttgtgtcatcgtcatagaga--aaaacatacaaataaaagtacc |
306 |
Q |
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| T |
13707029 |
agtaaaacatattatgattctacttgtctaaaatcttaaatcactagaaaaattaattgtgtcatcgtcatagagaaaaaaacatacaaat--aagtacc |
13706932 |
T |
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| Q |
307 |
ataaattgtaaaagtttatatcataatttgtttttactctatctcggaaaatttaattgtgtcgtcgtcatagag |
381 |
Q |
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| T |
13706931 |
ataaattgtaaaagtttatatcataatttgtttttactctatctcggaaaatttaattgtgtcatcgtcatagag |
13706857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 13706885 - 13706829
Alignment:
| Q |
255 |
gaaaaattatttgtgtcatcgtcatagagaaaaacatacaaataaaagtaccataaa |
311 |
Q |
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| T |
13706885 |
gaaaatttaattgtgtcatcgtcatagagaaaaacatacaaataaaagtaccataaa |
13706829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 453
Target Start/End: Complemental strand, 13706826 - 13706786
Alignment:
| Q |
413 |
tgatatttattttatgcaggccataaagtaaaccaaaacag |
453 |
Q |
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| T |
13706826 |
tgatatttattttatgcaggccataaagtaaatcaaaacag |
13706786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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