View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19569_low_4 (Length: 252)
Name: NF19569_low_4
Description: NF19569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19569_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 33413287 - 33413062
Alignment:
| Q |
12 |
agtgagatgaaaggatatcgttcatcaacaatgttttcttcatatggagatgc----atctcctctagcataataaaagcatgtcttcccaaaaactgaa |
107 |
Q |
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| T |
33413287 |
agtgacatgaaaggatatcgttcatcaacaatgttttcttcatatggagatggtgatatctcctctagcataataaaagcatgtcttgccaaaaactgaa |
33413188 |
T |
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| Q |
108 |
ggaaattcaagaattggatccttcttgtaaaagacagaaggagatcctcatcaagtgttggaagaataccttaggtttgtcttgtgactaaaccaaaagt |
207 |
Q |
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| T |
33413187 |
ggaaattcaagaattggatccttcttgtaaaagacagaaggagatcctcatcaagtgttggaaaaataccttaggtttgtcttgtgactaaaccaaaagt |
33413088 |
T |
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| Q |
208 |
ataaaaaggaaagctaaactacaatt |
233 |
Q |
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| T |
33413087 |
aaaaaaaggaaagctaaactacaatt |
33413062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 33491706 - 33491487
Alignment:
| Q |
18 |
atgaaaggatatcgttcatcaacaatgttttcttcatatggagatgc----atctcctctagcataataaaagcatgtcttcccaaaaa-ctgaaggaaa |
112 |
Q |
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| T |
33491706 |
atgaaatgatatctttcatcaacaatgttttcttcagatggagatggtgatatctcctccag--taataaaaccatgtcttcccaaaaaactgaaggaaa |
33491609 |
T |
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| Q |
113 |
ttcaagaattggatccttcttgtaaaagacagaaggagatcctcatcaagtgttggaagaataccttaggtttgtcttgtgactaaaccaaaagt--ata |
210 |
Q |
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| T |
33491608 |
ttcaagaattggatccttcttgtaaaagata-aagaagatcctcatcaagtgttggaagaaaaccttaggtttgtcttgtaagtaaaccaaaagtaaaaa |
33491510 |
T |
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| Q |
211 |
aaaaggaaagctaaactacaatt |
233 |
Q |
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|||| ||||||||||||||||| |
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| T |
33491509 |
aaaaataaagctaaactacaatt |
33491487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 33420427 - 33420214
Alignment:
| Q |
12 |
agtgagatgaaaggatatcgttcatcaacaatgttttcttcatatggagatgc----atctcctct---agcataataaaagcatg----tcttcccaaa |
100 |
Q |
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||||| |||||| ||||| |||||||||||||||||||| | ||||||||| ||||||||| |||| |||||||||||| ||| |||||| |
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| T |
33420427 |
agtgacatgaaatgatatatttcatcaacaatgttttctttagatggagatggtgatatctcctcttgtagcaaaataaaagcatgcatgtctccccaaa |
33420328 |
T |
|
| Q |
101 |
aactgaaggaaattcaagaattggatccttcttgtaaaagacagaaggagatcctcatcaagtgttggaagaataccttaggtttgtcttgtgactaaac |
200 |
Q |
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| T |
33420327 |
aaccgaaggaaattcaagaatttgatccttcaagtaaaagacataaggagatcctcatcaagtgttggaagaataccttaggtttgtctcatgagtgaac |
33420228 |
T |
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| Q |
201 |
caaaagtataaaaa |
214 |
Q |
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| T |
33420227 |
caaaagtaaaaaaa |
33420214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 28812407 - 28812510
Alignment:
| Q |
112 |
attcaagaattggatccttcttgtaaaa-gacagaaggagatcctcatcaagtgttggaagaataccttaggtttgtcttgtgactaaaccaaaagtata |
210 |
Q |
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|||||||||||||||||||| | |||| |||||||||| ||||||||||| |||||||||||||||||| ||| | | ||| ||||||||||||| | |
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| T |
28812407 |
attcaagaattggatccttcaagaaaaaagacagaaggatatcctcatcaaaagttggaagaataccttagattttgcgtatgagtaaaccaaaagtaca |
28812506 |
T |
|
| Q |
211 |
aaaa |
214 |
Q |
| |
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|||| |
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|
| T |
28812507 |
aaaa |
28812510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 28812259 - 28812368
Alignment:
| Q |
12 |
agtgagatgaaaggatatcgttcatcaacaatgttttcttcatatggagatg----catctcctc---tagcataataaaagcatgtcttcccaaaaact |
104 |
Q |
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||||| |||||| |||||| |||||| ||||||||||||||| ||||||||| |||||||| | |||| |||||||| |||||||||||||||| |
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| T |
28812259 |
agtgacatgaaatgatatctttcatcgacaatgttttcttcagatggagatggtgatatctcctctggttgcatgataaaagcgtgtcttcccaaaaact |
28812358 |
T |
|
| Q |
105 |
gaaggaaatt |
114 |
Q |
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|||||||||| |
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| T |
28812359 |
gaaggaaatt |
28812368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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