View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1956_high_14 (Length: 296)
Name: NF1956_high_14
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1956_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 3407122 - 3406855
Alignment:
| Q |
18 |
gatatagcatcaattgaatagcaaatcctgaagtttagtccatgaaagtgtagctcattgtcacaatagtcccacaaatcaacaaattaaaatttaaccc |
117 |
Q |
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| T |
3407122 |
gatatagcatcaattgaatagcaaatcctgaattttagtccatgaaagtgtagctcattttcacaatagtcccacaaatcaacaaattaaaatttaacct |
3407023 |
T |
|
| Q |
118 |
aaatatattatctgttagtcactttaaactctatcgtcaaccatgttattaaaaatactgatgtcacacatacacttggttgtataaccacgtgtatgcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3407022 |
aaatatattatctgttagtcactttaaactctatcgtcaaccatactattaaaaatactgatgtcacacatacacttggttgtataaccacgtgtatgcc |
3406923 |
T |
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| Q |
218 |
acatcacgaattaattaaagccacgtcatcctctttctctttgtctttctcattactactttctctct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3406922 |
acatcacgaattaattaaagccacgtcatcctctttctctttgtctttctcattgttactttctctct |
3406855 |
T |
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