View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1956_high_15 (Length: 283)
Name: NF1956_high_15
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1956_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 2597561 - 2597677
Alignment:
| Q |
1 |
acacaatgctcggaggttcagaaaaggctgcttatctgtacacgtctcttgttcgctcaatatctccaacattaagttcttcataaagtgcataattaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2597561 |
acacaatgctcggaggttcagaaaaggctgcttacctgtacacgtctcttgttcgctcaatatctccaacattaagttcttcataaagtgcataactaat |
2597660 |
T |
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| Q |
101 |
cctaagttacacatgga |
117 |
Q |
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|| |||||||||||||| |
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| T |
2597661 |
ccaaagttacacatgga |
2597677 |
T |
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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 2597779 - 2597824
Alignment:
| Q |
219 |
gtgctaccagtatcgcttctcatcggctagaggaacatcagctata |
264 |
Q |
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||||| ||||||||| |||||||||||||||||||||| ||||||| |
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| T |
2597779 |
gtgctgccagtatcgattctcatcggctagaggaacattagctata |
2597824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 2292409 - 2292517
Alignment:
| Q |
1 |
acacaatgctcggaggttcagaaaaggctgcttatctgtacacgtctcttgttcgctcaatatctccaacattaagttcttcataaagtgcataattaat |
100 |
Q |
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|||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||| |
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| T |
2292409 |
acacaatgcttggaagttcacaaaaggctgcttacttgtacacgtctcttgttcgctccatgtctccagcatcgagttcttcatagagtgcataattaat |
2292508 |
T |
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| Q |
101 |
cctaagtta |
109 |
Q |
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||||||||| |
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| T |
2292509 |
cctaagtta |
2292517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 34788769 - 34788673
Alignment:
| Q |
16 |
gttcagaaaaggctgcttatctgtacacgtctcttgttcgctcaatatctccaacattaagttcttcataaagtgcataattaatcctaagttacac |
112 |
Q |
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||||| ||||||||||||| ||||||| ||||||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
34788769 |
gttcacaaaaggctgcttacttgtacacatctcttgtttgctccatatctccagcatcaagttcttcataaagtgcataattaatcctaagatacac |
34788673 |
T |
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