View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1956_high_2 (Length: 538)

Name: NF1956_high_2
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1956_high_2
NF1956_high_2
[»] chr7 (6 HSPs)
chr7 (4-205)||(17472584-17472786)
chr7 (4-205)||(17580428-17580630)
chr7 (203-332)||(17472415-17472544)
chr7 (203-332)||(17580670-17580799)
chr7 (414-523)||(17472221-17472330)
chr7 (414-523)||(17580884-17580993)
[»] chr1 (3 HSPs)
chr1 (4-133)||(43382026-43382155)
chr1 (418-523)||(43381596-43381699)
chr1 (203-305)||(43381804-43381904)
[»] chr8 (3 HSPs)
chr8 (416-523)||(18428453-18428559)
chr8 (68-133)||(18428881-18428946)
chr8 (246-312)||(18428659-18428726)
[»] chr2 (3 HSPs)
chr2 (8-133)||(16286174-16286299)
chr2 (443-499)||(16286663-16286719)
chr2 (215-309)||(16286437-16286535)
[»] chr4 (3 HSPs)
chr4 (210-303)||(50167280-50167373)
chr4 (8-133)||(50167027-50167153)
chr4 (447-508)||(50167516-50167577)
[»] chr5 (2 HSPs)
chr5 (229-307)||(38617485-38617566)
chr5 (246-301)||(30324066-30324121)
[»] chr6 (1 HSPs)
chr6 (246-309)||(24199419-24199482)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 17472786 - 17472584
Alignment:
Q  4 aatatcaatattactgctagcatttttacaatctcaatgcaaataaaactactgaaaatttagataacatcagacactttaatcaaatttttaatataca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17472786 aatatcaatattactgctagcatttttacaatctcaatgcaaataaaactactgaaaatttagataacatcagacactttaatcaaatttttaatataca 17472687  T
Q  104 caactctaaaaatataaagtttgattaaaaatatactactctgtaca-nnnnnnnacaacttttattatttttgttcaattctacaaatcctttcttttg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  17472686 caactctaaaaatataaagtttgattaaaaatatactactctgtacattttttttacaacttttattatttttgttcaattctacaaatcctttcttttg 17472587  T
Q  203 ttg 205  Q
    |||    
T  17472586 ttg 17472584  T

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Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 17580428 - 17580630
Alignment:
Q  4 aatatcaatattactgctagcatttttacaatctcaatgcaaataaaactactgaaaatttagataacatcagacactttaatcaaatttttaatataca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17580428 aatatcaatattactgctagcatttttacaatctcaatgcaaataaaactactgaaaatttagataacatcagacactttaatcaaatttttaatataca 17580527  T
Q  104 caactctaaaaatataaagtttgattaaaaatatactactctgtaca-nnnnnnnacaacttttattatttttgttcaattctacaaatcctttcttttg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  17580528 caactctaaaaatataaagtttgattaaaaatatactactctgtacattttttttacaacttttattatttttgttcaattctacaaatcctttcttttg 17580627  T
Q  203 ttg 205  Q
    |||    
T  17580628 ttg 17580630  T

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Target: chr7; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 17472544 - 17472415
Alignment:
Q  203 ttgcaaccttgcgcttcatctttaattgaatccacataactggaaaaatagaacaaatcaataaaattcattcaaaaccaaagaacaattggtcgaagag 302  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17472544 ttgcaatcttgcgcttcatttttaattgaatccacataactggaaaaatagagcaaatcaataaaattcattcaaaaccaaagaacaattggtcgaagag 17472445  T
Q  303 caacccataatatatatttcaactgttgct 332  Q
    ||||||||||||||||||||||||||||||    
T  17472444 caacccataatatatatttcaactgttgct 17472415  T

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Target: chr7; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 203 - 332
Target Start/End: Original strand, 17580670 - 17580799
Alignment:
Q  203 ttgcaaccttgcgcttcatctttaattgaatccacataactggaaaaatagaacaaatcaataaaattcattcaaaaccaaagaacaattggtcgaagag 302  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17580670 ttgcaatcttgcgcttcatttttaattgaatccacataactggaaaaatagagcaaatcaataaaattcattcaaaaccaaagaacaattggtcgaagag 17580769  T
Q  303 caacccataatatatatttcaactgttgct 332  Q
    ||||||||||||||||||||||||||||||    
T  17580770 caacccataatatatatttcaactgttgct 17580799  T

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Target: chr7; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 414 - 523
Target Start/End: Complemental strand, 17472330 - 17472221
Alignment:
Q  414 ttgatttaaataaattgcaaactgatagtagtcaagaaccaaaaacaaatatgtgatatttagagaataaggatgagacactatttataggcactatgaa 513  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17472330 ttgatttaaataaattgcaaactcatagtagtcaagaaccaaaaacaaatatgtgatatttagagaataaggatgagacactatttataggcactatgaa 17472231  T
Q  514 gaaaaataat 523  Q
    ||||||||||    
T  17472230 gaaaaataat 17472221  T

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Target: chr7; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 414 - 523
Target Start/End: Original strand, 17580884 - 17580993
Alignment:
Q  414 ttgatttaaataaattgcaaactgatagtagtcaagaaccaaaaacaaatatgtgatatttagagaataaggatgagacactatttataggcactatgaa 513  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17580884 ttgatttaaataaattgcaaactcatagtagtcaagaaccaaaaacaaatatgtgatatttagagaataaggatgagacactatttataggcactatgaa 17580983  T
Q  514 gaaaaataat 523  Q
    ||||||||||    
T  17580984 gaaaaataat 17580993  T

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Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 43382155 - 43382026
Alignment:
Q  4 aatatcaatattactgctagcatttttacaatctcaatgcaaataaaactactgaaaatttagataacatcagacactttaatcaaatttttaatataca 103  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| | |||| || ||||||||||||||||||||||||||| |    
T  43382155 aatatcaatattactgcttgcatttttacaatctcaatgcagataaaactacttaaaattcatataatataagacactttaatcaaatttttaatataga 43382056  T
Q  104 caactctaaaaatataaagtttgattaaaa 133  Q
    ||||||||||||||||||| ||||||||||    
T  43382055 caactctaaaaatataaagattgattaaaa 43382026  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 418 - 523
Target Start/End: Complemental strand, 43381699 - 43381596
Alignment:
Q  418 tttaaataaattgcaaactgatagtagtcaagaaccaaaaacaaatatgtgatatttagagaataaggatgagacactatttataggcactatgaagaaa 517  Q
    |||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  43381699 tttaaataaattgcaaactga--gtagtcaagaaccagaaacaaatatgtgatatttagagaataaagatgagacactatttataagcactatgaagaaa 43381602  T
Q  518 aataat 523  Q
    ||||||    
T  43381601 aataat 43381596  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 203 - 305
Target Start/End: Complemental strand, 43381904 - 43381804
Alignment:
Q  203 ttgcaaccttgcgcttcatctttaattgaatccacataactggaaaaatagaacaaatcaataaaattcattcaaaaccaaagaacaattggtcgaagag 302  Q
    ||||| |||||| |||||||||| |||||||||||||||||||||||||  ||||||| |||||||| || |||||| ||||||||||||||||||||||    
T  43381904 ttgcagccttgcacttcatctttgattgaatccacataactggaaaaat--aacaaattaataaaatccagtcaaaatcaaagaacaattggtcgaagag 43381807  T
Q  303 caa 305  Q
    |||    
T  43381806 caa 43381804  T

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Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 416 - 523
Target Start/End: Complemental strand, 18428559 - 18428453
Alignment:
Q  416 gatttaaataaattgcaaactgatagtagtcaagaaccaaaaacaaatatgtgatatttagagaataaggatgagacactatttataggcactatgaaga 515  Q
    ||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  18428559 gatttaaataaattgcaaactcagagtagtcaaggaccaaaaacaaatatgtgatatttagagaataaggatgatac-ctatttataggcactatgaaga 18428461  T
Q  516 aaaataat 523  Q
    ||||||||    
T  18428460 aaaataat 18428453  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 18428946 - 18428881
Alignment:
Q  68 taacatcagacactttaatcaaatttttaatatacacaactctaaaaatataaagtttgattaaaa 133  Q
    |||||| |||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||    
T  18428946 taacattagacacttcaatcaaatttttaatatatacaactcaaaaaatataaagcttgattaaaa 18428881  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 18428726 - 18428659
Alignment:
Q  246 aaaaatagaacaaatcaataaaattcattcaaaaccaaagaacaa-ttggtcgaagagcaacccataa 312  Q
    |||||| ||| |||||||||||||||| ||||||||||||| ||| ||||| ||||||||||||||||    
T  18428726 aaaaattgaataaatcaataaaattcagtcaaaaccaaagagcaatttggttgaagagcaacccataa 18428659  T

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Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 16286174 - 16286299
Alignment:
Q  8 tcaatattactgctagcatttttacaatctcaatgcaaataaaactactgaaaatttagataacatcagacactttaatcaaatttttaatatacacaac 107  Q
    |||||||||||||||||||||| | ||||||||||| || ||||||||  | |||  | ||||||| |||||||||||||||||||||||| || |||||    
T  16286174 tcaatattactgctagcattttaaaaatctcaatgcgaacaaaactacatataatccacataacattagacactttaatcaaatttttaatttatacaac 16286273  T
Q  108 tctaaaaatataaagtttgattaaaa 133  Q
    |||| |||| ||||  ||||||||||    
T  16286274 tctacaaatgtaaaacttgattaaaa 16286299  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 499
Target Start/End: Original strand, 16286663 - 16286719
Alignment:
Q  443 agtcaagaaccaaaaacaaatatgtgatatttagagaataaggatgagacactattt 499  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||| ||| |||||    
T  16286663 agtcaagaaccaagaacaaatatgtgatatttagaaaatagggatgaaacattattt 16286719  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 16286437 - 16286535
Alignment:
Q  215 gcttcatctttaattgaatccacataactgga-----aaaatagaacaaatcaataaaattcattcaaaaccaaagaacaattggtcgaagagcaaccca 309  Q
    ||||||||||||| |||||| |||||||||||     |||||||||||||||||||||||| | | ||||| ||| ||||| | ||||||||| ||||||    
T  16286437 gcttcatctttaaatgaatctacataactggaaaaataaaatagaacaaatcaataaaatttagttaaaacgaaataacaa-tcgtcgaagagtaaccca 16286535  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 303
Target Start/End: Original strand, 50167280 - 50167373
Alignment:
Q  210 cttgcgcttcatctttaattgaatccacataactggaaaaatagaacaaatcaataaaattcattcaaaaccaaagaacaattggtcgaagagc 303  Q
    |||| ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| | | ||| | ||||| |||| |||||||||||    
T  50167280 cttgagcttcatctttaaatgaatctacataactgaaaaaatagaacaaatcaataaaatttacttaaaccgaaagaccaatcggtcgaagagc 50167373  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 50167027 - 50167153
Alignment:
Q  8 tcaatattact-gctagcatttttacaatctcaatgcaaataaaactactgaaaatttagataacatcagacactttaatcaaatttttaatatacacaa 106  Q
    ||||||||||| ||||||||||||| ||||| || || || ||||||||| | |||  | |||||||  |||||||||||||||||||||||||| ||||    
T  50167027 tcaatattacttgctagcatttttaaaatctaaacgcgaacaaaactacttataatccacataacattggacactttaatcaaatttttaatatatacaa 50167126  T
Q  107 ctctaaaaatataaagtttgattaaaa 133  Q
    || || |||| ||||  ||||||||||    
T  50167127 ctttacaaatgtaaaacttgattaaaa 50167153  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 447 - 508
Target Start/End: Original strand, 50167516 - 50167577
Alignment:
Q  447 aagaaccaaaaacaaatatgtgatatttagagaataaggatgagacactatttataggcact 508  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||| ||| ||||||||||    
T  50167516 aagaaccaagaacaaatatgtgatatttagagaatatggatgagacattatctataggcact 50167577  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 38617485 - 38617566
Alignment:
Q  229 tgaatccacataactggaaaa---atagaacaaatcaataaaattcattcaaaaccaaagaacaattggtcgaagagcaacc 307  Q
    |||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||| || ||||||||||||| |||||    
T  38617485 tgaatctacataactggaaaaaaaatagaacaaatcaataaaatttagtcaaaaccaaaaaataattggtcgaagaacaacc 38617566  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 30324121 - 30324066
Alignment:
Q  246 aaaaatagaacaaatcaataaaattcattcaaaaccaaagaacaattggtcgaaga 301  Q
    ||||||||||||||||||||||||| |  |||| ||||| || |||||||||||||    
T  30324121 aaaaatagaacaaatcaataaaatttagacaaacccaaaaaataattggtcgaaga 30324066  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 24199419 - 24199482
Alignment:
Q  246 aaaaatagaacaaatcaataaaattcattcaaaaccaaagaacaattggtcgaagagcaaccca 309  Q
    ||||||||||||||||||| ||||| | |||| ||||||||  ||| |||| ||||||||||||    
T  24199419 aaaaatagaacaaatcaatgaaatttaatcaataccaaagattaataggtcaaagagcaaccca 24199482  T

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