View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1956_high_25 (Length: 234)

Name: NF1956_high_25
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1956_high_25
NF1956_high_25
[»] chr6 (1 HSPs)
chr6 (5-234)||(3017191-3017420)
[»] chr4 (1 HSPs)
chr4 (1-234)||(34343461-34343694)
[»] chr7 (1 HSPs)
chr7 (1-234)||(46420711-46420944)
[»] chr5 (1 HSPs)
chr5 (24-234)||(37279189-37279399)
[»] scaffold0667 (1 HSPs)
scaffold0667 (62-131)||(3195-3264)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 3017191 - 3017420
Alignment:
Q  5 tcggcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcagagtcacttc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3017191 tcggcccttaattaatacattgatttatgtattatcaataacagtggtaaaaatctcaaataacaaacttggccctttaaaacttcagcagagtcacttc 3017290  T
Q  105 actccatatcaaaaacatcaataagagaagatcaaaatgaacagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaaggatt 204  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3017291 actccatttcaaaaacatcaataagagaagatcaaaatgaacaattgattcaatggtttattaattttcggatttggaatagaaggagaaattaaggatt 3017390  T
Q  205 aatgaaaatttggtccttttgctttagatt 234  Q
    ||||||||||||||||||||||||||||||    
T  3017391 aatgaaaatttggtccttttgctttagatt 3017420  T

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Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 34343461 - 34343694
Alignment:
Q  1 tcagtcggcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcagagtca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34343461 tcagtcggcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcaaagtca 34343560  T
Q  101 cttcactccatatcaaaaacatcaataagagaagatcaaaatgaacagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaag 200  Q
    |||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34343561 cttcactccatatcaaaaacattaacaagagaagatcaaaatgagcagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaag 34343660  T
Q  201 gattaatgaaaatttggtccttttgctttagatt 234  Q
    ||||||||||||||||||| ||||||||||||||    
T  34343661 gattaatgaaaatttggtctttttgctttagatt 34343694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 46420944 - 46420711
Alignment:
Q  1 tcagtcggcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcagagtca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  46420944 tcagtcggcccttaattaatacattgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacatcagcaaagtca 46420845  T
Q  101 cttcactccatatcaaaaacatcaataagagaagatcaaaatgaacagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaag 200  Q
    |||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46420844 cttcactccatatcaaaaacattaacaagagaagatcaaaatgagcagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaag 46420745  T
Q  201 gattaatgaaaatttggtccttttgctttagatt 234  Q
    ||||||||||||||||||| ||||||||||||||    
T  46420744 gattaatgaaaatttggtctttttgctttagatt 46420711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 37279399 - 37279189
Alignment:
Q  24 ttgatttatgtattatcaataacagtggtaacaatctcaaataacaaacttggccctttaaaacttcagcagagtcacttcactccatatcaaaaacatc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||     
T  37279399 ttgatttatgtattatcaataacagtggtaacaatctcaaataaaaaactcggccctttaaaacttcagcaaagtcacttcactccatatcaaaaacatt 37279300  T
Q  124 aataagagaagatcaaaatgaacagttgattcaatggtttattaattttcggatttggaatagaaggagaaattaaggattaatgaaaatttggtccttt 223  Q
    || || ||||||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |||| |||    
T  37279299 aacaatagaagattaaaatgagcaattgattcaatggtttattaatttttggatttggaatagaaggggaacttaaggattaatgaaaattgggtctttt 37279200  T
Q  224 tgctttagatt 234  Q
    |||||||||||    
T  37279199 tgctttagatt 37279189  T

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Target: scaffold0667 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 3195 - 3264
Alignment:
Q  62 aaataacaaacttggccctttaaaacttcagcagagtcacttcactccatatcaaaaacatcaataagag 131  Q
    ||||||||| || | ||||||||||||||||||  ||  |||||||||||||||||| ||| || |||||    
T  3195 aaataacaagctcgaccctttaaaacttcagcaacgttgcttcactccatatcaaaaccattaacaagag 3264  T

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