View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1956_high_3 (Length: 481)
Name: NF1956_high_3
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1956_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 13 - 464
Target Start/End: Complemental strand, 47310216 - 47309756
Alignment:
| Q |
13 |
aatatcacaacaactaaactatattccctcccctacaagcaccatccgtatttaaattcacccaattatcttgcgttggcttccacctaaggaaacctat |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
47310216 |
aataccacaacaactaaactatattccctcccctacaagcaccatccgtatttaaattcacccaattatcttgcggaggcctccacctaaggaaacctat |
47310117 |
T |
|
| Q |
113 |
cacacgttggaaataattttgttcgtcattcttgcttgattgtaatctactgaaatctttagaacatgatt---------aattggtctaacaaaattat |
203 |
Q |
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| T |
47310116 |
cacacgttggaaataattttgttcgtcattcttgcttgattgtaatctaatgaaatctttagaacatgattcacatgattaattggtctaacaaaattat |
47310017 |
T |
|
| Q |
204 |
gtgcatgcaactccttattcctccacgtccacaaacaatgacgagctatccccaaatatctctccaatctccatttcctctccaaccaacaccatgattt |
303 |
Q |
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| T |
47310016 |
gttcatgcaactccttattgctccacgtccacaaacaatgacgagctatccccaaatatctctccaatctccatttcctctccaaccaacaccatgattt |
47309917 |
T |
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| Q |
304 |
aaattgaaaattaatccaattatccaagttacccataattaaagaattgattgttatcttaatttggaatagcacttttccacagctgcagcaccccctt |
403 |
Q |
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| T |
47309916 |
aaatttaaaattaatccaattatccaagttacccataattaaagaattgattgttatcttcatttggaatagcacttttccacagctgcagcaccccctt |
47309817 |
T |
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| Q |
404 |
aatgcatgtaaacaagtttcctccacgtcatcgcaataaacacacatttgagggagagaca |
464 |
Q |
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| T |
47309816 |
aatgcatgtaaacaagtttcctccacgtcatcgcaataaacacacatttgagggagagaca |
47309756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 310
Target Start/End: Original strand, 21310297 - 21310428
Alignment:
| Q |
180 |
gattaattggtctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatgacgagcta-tccccaaatatctctccaatctccatt |
278 |
Q |
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||||||||||||||||||||| || | |||||||||||| ||||||||| |||||||||||||| | | || | ||||||||||| ||||||||| || |
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| T |
21310297 |
gattaattggtctaacaaaatcattttcatgcaactcctaattcctccatgtccacaaacaatggcatgttattgcccaaatatctttccaatctctatc |
21310396 |
T |
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| Q |
279 |
tcctctccaaccaacaccatgatttaaattga |
310 |
Q |
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| T |
21310397 |
ccccctccaaccagcatcatggcttaaattga |
21310428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 50564543 - 50564444
Alignment:
| Q |
180 |
gattaattggtctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatgacgagctatc-cccaaatatctctccaatctccatt |
278 |
Q |
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||||| ||||||||||||| |||| | |||||||||||||||||||||| ||| |||||||||| | | | || ||||||||||| ||||||||||||| |
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| T |
50564543 |
gattagttggtctaacaaatttattttcatgcaactccttattcctccatgtcgacaaacaatggcatgttgtcgcccaaatatctttccaatctccatt |
50564444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 45089281 - 45089346
Alignment:
| Q |
180 |
gattaattggtctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatgac |
245 |
Q |
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| T |
45089281 |
gattaattcatctaacaaaattgcattcatgcaactccttattcctccacgttcataaacaatgac |
45089346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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