View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1956_high_4 (Length: 461)

Name: NF1956_high_4
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1956_high_4
NF1956_high_4
[»] chr3 (12 HSPs)
chr3 (1-196)||(43616161-43616356)
chr3 (265-391)||(29438248-29438374)
chr3 (265-398)||(43615679-43615812)
chr3 (2-113)||(43609698-43609810)
chr3 (392-444)||(43615024-43615076)
chr3 (3-113)||(43603290-43603400)
chr3 (124-194)||(42914485-42914555)
chr3 (198-236)||(29438417-29438455)
chr3 (196-236)||(43615840-43615880)
chr3 (125-196)||(29313137-29313208)
chr3 (323-385)||(11985585-11985647)
chr3 (390-444)||(42914669-42914723)
[»] chr7 (10 HSPs)
chr7 (274-386)||(19362399-19362511)
chr7 (265-385)||(44598444-44598563)
chr7 (270-386)||(47967521-47967636)
chr7 (311-386)||(9698331-9698406)
chr7 (313-385)||(19113527-19113598)
chr7 (195-236)||(31642754-31642795)
chr7 (196-236)||(44598579-44598619)
chr7 (196-233)||(9698211-9698248)
chr7 (401-444)||(23705219-23705262)
chr7 (153-196)||(23705386-23705429)
[»] chr1 (8 HSPs)
chr1 (278-386)||(52453923-52454031)
chr1 (271-386)||(170872-170987)
chr1 (275-386)||(4808345-4808456)
chr1 (311-386)||(28702407-28702478)
chr1 (196-233)||(171039-171076)
chr1 (196-236)||(52453836-52453876)
chr1 (125-196)||(46906000-46906071)
chr1 (148-181)||(26673786-26673819)
[»] chr6 (3 HSPs)
chr6 (288-386)||(14533478-14533576)
chr6 (196-236)||(14533644-14533684)
chr6 (311-371)||(20613247-20613307)
[»] chr8 (5 HSPs)
chr8 (313-385)||(27084472-27084544)
chr8 (124-196)||(33285070-33285142)
chr8 (396-444)||(3499376-3499424)
chr8 (196-236)||(25430942-25430982)
chr8 (392-444)||(33285257-33285309)
[»] chr2 (8 HSPs)
chr2 (279-386)||(17623420-17623527)
chr2 (125-196)||(32532765-32532836)
chr2 (397-444)||(32532598-32532645)
chr2 (393-444)||(12287805-12287856)
chr2 (271-363)||(14735690-14735782)
chr2 (304-371)||(5887872-5887939)
chr2 (304-366)||(17303255-17303317)
chr2 (148-196)||(12287972-12288020)
[»] chr4 (6 HSPs)
chr4 (311-386)||(13564708-13564783)
chr4 (196-233)||(13564588-13564625)
chr4 (261-366)||(26494421-26494525)
chr4 (276-364)||(31523046-31523134)
chr4 (272-338)||(46852108-46852174)
chr4 (318-371)||(29096115-29096168)
[»] chr5 (8 HSPs)
chr5 (125-196)||(4870217-4870288)
chr5 (125-196)||(3631947-3632018)
chr5 (276-371)||(15974121-15974216)
chr5 (154-196)||(13106135-13106177)
chr5 (311-371)||(18768380-18768440)
chr5 (125-196)||(2977233-2977304)
chr5 (154-196)||(13036145-13036187)
chr5 (396-444)||(10721279-10721327)
[»] scaffold0060 (1 HSPs)
scaffold0060 (311-385)||(35661-35735)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 43616356 - 43616161
Alignment:
Q  1 tgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616356 tgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaac 43616257  T
Q  101 aacaaagtaggatcattgacccgattaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 196  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616256 aacaaagtaggatcatagacccgattaattcaaggtcctctcaattcttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 43616161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 265 - 391
Target Start/End: Complemental strand, 29438374 - 29438248
Alignment:
Q  265 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 364  Q
    |||||||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29438374 ttcatggtaccccctttccactgcaccagctcaattcaaattgatattatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 29438275  T
Q  365 ctacccccaaagagatccgcccttgcc 391  Q
    || ||||||||||||||||||| ||||    
T  29438274 ctgcccccaaagagatccgcccctgcc 29438248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 265 - 398
Target Start/End: Complemental strand, 43615812 - 43615679
Alignment:
Q  265 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 364  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||    
T  43615812 ttcatggtaccccctttccactgcagcaactcaattcagattgatgttatactcctaatatagtatataaggaaactttaggggataacatgacacctgc 43615713  T
Q  365 ctacccccaaagagatccgcccttgccctcccgg 398  Q
    || |||||||| ||| ||| || |||||||||||    
T  43615712 ctgcccccaaaaagacccgtccatgccctcccgg 43615679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 43609810 - 43609698
Alignment:
Q  2 gaagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaa-c 100  Q
    |||||||||||||| |||||||||||| ||| || ||||||||| || |||| |||||||| ||||| |||||||| ||||||||||| ||||||||| |    
T  43609810 gaagccggaagacaattaacaattgcaccagacagcatagcagaagtataagaaagagcaacaccatgcacattcagagttaaagtaagtctgaaaaagc 43609711  T
Q  101 aacaaagtaggat 113  Q
    ||| |||||||||    
T  43609710 aaccaagtaggat 43609698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 43615076 - 43615024
Alignment:
Q  392 ctcccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttctt 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43615076 ctcccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttctt 43615024  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 43603400 - 43603290
Alignment:
Q  3 aagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaacaa 102  Q
    |||| ||||| || |||||||| ||||||||||||  |||||| |||||| |||| |||||||||| |||||||| || ||||||||||||||||| |||    
T  43603400 aagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaagtaattctgaaaagcaa 43603301  T
Q  103 caaagtaggat 113  Q
    | ||| |||||    
T  43603300 ccaagaaggat 43603290  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 42914485 - 42914555
Alignment:
Q  124 attaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctcctta 194  Q
    ||||||||||| |||||  |||  ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  42914485 attaattcaagctcctcctaatgcttgacatgtttatgcaactatcattagaaatatcaatgatctcctta 42914555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 29438455 - 29438417
Alignment:
Q  198 ttttaaatacgatatgcaataatagaagattaaacaagt 236  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  29438455 ttttaaatacaatatgcaataatagaagattaaacaagt 29438417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 43615880 - 43615840
Alignment:
Q  196 ttttttaaatacgatatgcaataatagaagattaaacaagt 236  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  43615880 ttttttaaatacgatattgaataatagaagattaaacaagt 43615840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 29313137 - 29313208
Alignment:
Q  125 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 196  Q
    |||||||||| ||| || |||  ||| ||||||||||| |||||||| |||||||| || ||||||||||||    
T  29313137 ttaattcaagctccccttaatgcttgacatgtttatgccactatcatcagaaatattaaggatctccttaat 29313208  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 11985585 - 11985647
Alignment:
Q  323 tatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 385  Q
    |||||||||||||  ||  |||||||||||| |||| |||||| ||| |||||||||||||||    
T  11985585 tatagtatataagttaatcttgggggataccgtggctcctgccgaccaccaaagagatccgcc 11985647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 42914669 - 42914723
Alignment:
Q  390 ccctcccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttctt 444  Q
    ||||||||  |||||||| ||| |||||||||||| | |||||||||||||||||    
T  42914669 ccctcccgaacttggaagctttacttctcgctgatacatctagagtgcagttctt 42914723  T

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Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 274 - 386
Target Start/End: Complemental strand, 19362511 - 19362399
Alignment:
Q  274 ccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctaccccca 373  Q
    ||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19362511 ccccctttccactgcagcagctcaattcagattgatattatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctgccccca 19362412  T
Q  374 aagagatccgccc 386  Q
    |||||||||||||    
T  19362411 aagagatccgccc 19362399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 265 - 385
Target Start/End: Complemental strand, 44598563 - 44598444
Alignment:
Q  265 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 364  Q
    |||| ||||||||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44598563 ttcacggtaccccctttccactgcagcagctcaattcaaattaatattatactcctaatatagtatataaggaaactttgggggataccatgacacctgc 44598464  T
Q  365 ctacccccaaagagatccgcc 385  Q
    ||| |||||||||||| ||||    
T  44598463 cta-ccccaaagagatacgcc 44598444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 270 - 386
Target Start/End: Original strand, 47967521 - 47967636
Alignment:
Q  270 ggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacc 369  Q
    |||||||||||||||||  |||| ||||||| | ||| ||||||||||||||||||| |||||||||||| |||| ||||||||||||||| || || ||    
T  47967521 ggtaccccctttccactggagcagctcaatttagatttatgttatactcctaatataatatataaggaaattttgagggataccatggcacttg-ctgcc 47967619  T
Q  370 cccaaagagatccgccc 386  Q
    |||||| ||||||||||    
T  47967620 cccaaatagatccgccc 47967636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 9698331 - 9698406
Alignment:
Q  311 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 386  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  9698331 ttatactcttaatatagtatataaggaaactttggaggataccatggcacctaccgtcccccaaagagatccgccc 9698406  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 19113527 - 19113598
Alignment:
Q  313 atactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 385  Q
    |||| ||||||| |||||||||||||| ||||||| || ||||| |||| |||||||||||||||||||||||    
T  19113527 atacacctaatacagtatataaggaaaatttgggg-atgccatgacaccagcctacccccaaagagatccgcc 19113598  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 31642795 - 31642754
Alignment:
Q  195 attttttaaatacgatatgcaataatagaagattaaacaagt 236  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  31642795 attttttaaatacaatatgcaataatagaagattaaacaagt 31642754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 44598619 - 44598579
Alignment:
Q  196 ttttttaaatacgatatgcaataatagaagattaaacaagt 236  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  44598619 ttttttaaatacaatatgcaataatagaagattaaacaagt 44598579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 9698211 - 9698248
Alignment:
Q  196 ttttttaaatacgatatgcaataatagaagattaaaca 233  Q
    |||||||||||| |||||||||||||||||||||||||    
T  9698211 ttttttaaatacaatatgcaataatagaagattaaaca 9698248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 444
Target Start/End: Complemental strand, 23705262 - 23705219
Alignment:
Q  401 ttggaagattttcttctcgctgatgcgtctagagtgcagttctt 444  Q
    ||||||||||| ||||| |||||||||||||||||| |||||||    
T  23705262 ttggaagatttacttcttgctgatgcgtctagagtgtagttctt 23705219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 23705429 - 23705386
Alignment:
Q  153 atgtttatgcaactatcattagaaatatcaacgatctccttaat 196  Q
    |||||||||||||||||| |||||||||||| |||||| |||||    
T  23705429 atgtttatgcaactatcaatagaaatatcaatgatctctttaat 23705386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 278 - 386
Target Start/End: Original strand, 52453923 - 52454031
Alignment:
Q  278 ctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaaga 377  Q
    ||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  52453923 ctttccactgcagcagctcaattcaaattgatattatactcctaatatagtatataaggaaactttgggggataccatgacacttgcctgcccccaaaga 52454022  T
Q  378 gatccgccc 386  Q
    |||||||||    
T  52454023 gatccgccc 52454031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 271 - 386
Target Start/End: Complemental strand, 170987 - 170872
Alignment:
Q  271 gtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctaccc 370  Q
    ||||||||| |||||| || ||||||||||| | ||| | |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||    
T  170987 gtaccccctctccactgcaacaactcaattctagttgttattatactcctaatatactatataaggaaactttgggggatatcatggcacctgccttccc 170888  T
Q  371 ccaaagagatccgccc 386  Q
    |||||||||| |||||    
T  170887 ccaaagagattcgccc 170872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 275 - 386
Target Start/End: Complemental strand, 4808456 - 4808345
Alignment:
Q  275 cccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaa 374  Q
    ||||||||||||||||||| ||||||| | ||| |  |||||| ||||||| ||||||||||||||||||| |||||||| | ||||||||| ||| |||    
T  4808456 cccctttccactacagcaaatcaattctagttgttaatatacttctaatatggtatataaggaaactttggaggataccacgacacctgcctgccctcaa 4808357  T
Q  375 agagatccgccc 386  Q
    |||||| |||||    
T  4808356 agagattcgccc 4808345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 28702407 - 28702478
Alignment:
Q  311 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 386  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||| ||||||    |||||||||||||||||||    
T  28702407 ttatactcttaatatagtatataaggaaactttgagggataccatgtcacctg----cccccaaagagatccgccc 28702478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 171076 - 171039
Alignment:
Q  196 ttttttaaatacgatatgcaataatagaagattaaaca 233  Q
    |||||||||||| |||||||||||||||||||||||||    
T  171076 ttttttaaatacaatatgcaataatagaagattaaaca 171039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 52453836 - 52453876
Alignment:
Q  196 ttttttaaatacgatatgcaataatagaagattaaacaagt 236  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  52453836 ttttttaaatacaatatgctataatagaagattaaacaagt 52453876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 46906000 - 46906071
Alignment:
Q  125 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 196  Q
    ||||||||||  || ||||||| ||||||||||||||| |||| ||| |||||| | || ||||||||||||    
T  46906000 ttaattcaagcccccctcaattcttggcatgtttatgccactaccatcagaaatgttaaggatctccttaat 46906071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 26673786 - 26673819
Alignment:
Q  148 ttggcatgtttatgcaactatcattagaaatatc 181  Q
    |||||||||||||||||||| |||||||||||||    
T  26673786 ttggcatgtttatgcaactaacattagaaatatc 26673819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 288 - 386
Target Start/End: Complemental strand, 14533576 - 14533478
Alignment:
Q  288 cagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 386  Q
    ||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14533576 cagcagctcaatttatattgatgttatactcctaatatagtatatcaggaaactttgggggataccatggcacctgcctgcccccaaagagatccgccc 14533478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 14533684 - 14533644
Alignment:
Q  196 ttttttaaatacgatatgcaataatagaagattaaacaagt 236  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  14533684 ttttttaaatacaatatgcaacaatagaagattaaacaagt 14533644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 20613247 - 20613307
Alignment:
Q  311 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 371  Q
    |||||| ||||||||||||||||||| || | |||||||| ||||||||||| ||| ||||    
T  20613247 ttatacacctaatatagtatataagggaaatctgggggatgccatggcacctacctgcccc 20613307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 27084472 - 27084544
Alignment:
Q  313 atactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 385  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  27084472 atacacctaatatagtatataaggaaactttgggggatgccatggcacctgccttcccccaaagagatccgcc 27084544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 33285070 - 33285142
Alignment:
Q  124 attaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 196  Q
    ||||||| ||| ||||| ||||  ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  33285070 attaatttaagctcctcccaatgcttgacatgtttatgcaactatcattagaaatatcaacgatctgcttaat 33285142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 444
Target Start/End: Original strand, 3499376 - 3499424
Alignment:
Q  396 cgggcttggaagattttcttctcgctgatgcgtctagagtgcagttctt 444  Q
    ||||||||||||| || ||||||||||||| || |||||||||||||||    
T  3499376 cgggcttggaagagttacttctcgctgatgtgtttagagtgcagttctt 3499424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 25430982 - 25430942
Alignment:
Q  196 ttttttaaatacgatatgcaataatagaagattaaacaagt 236  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  25430982 tttttttaatacaatatgcaataatagaagattaaacaagt 25430942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 33285257 - 33285309
Alignment:
Q  392 ctcccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttctt 444  Q
    |||||||||||||||| ||| |||||| || |||| ||||||||| |||||||    
T  33285257 ctcccgggcttggaagctttacttctcactaatgcatctagagtgtagttctt 33285309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 386
Target Start/End: Original strand, 17623420 - 17623527
Alignment:
Q  279 tttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagag 378  Q
    |||||||| ||||| ||||||||   ||| | ||||||| |||||||||||||||||||||||||||||||||||||| ||| || || |||||||||||    
T  17623420 tttccactgcagcagctcaattctggttgttattatacttctaatatagtatataaggaaactttgggggataccatgacacatgtctgcccccaaagag 17623519  T
Q  379 atccgccc 386  Q
    ||||||||    
T  17623520 atccgccc 17623527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 32532836 - 32532765
Alignment:
Q  125 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 196  Q
    |||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32532836 ttaattcaagctcctctcaactcttggcatgtttatgcaactatcattagaaatatcaatgatctccttaat 32532765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 397 - 444
Target Start/End: Complemental strand, 32532645 - 32532598
Alignment:
Q  397 gggcttggaagattttcttctcgctgatgcgtctagagtgcagttctt 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32532645 gggcttggaagattttcttctcgctgatgcgtctagagtgcagttctt 32532598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 12287856 - 12287805
Alignment:
Q  393 tcccgggcttggaagattttcttctcgctgatgcgtctagagtgcagttctt 444  Q
    |||| |||||||||||||| || ||||||||||| |||||||||||||||||    
T  12287856 tcccaggcttggaagatttactcctcgctgatgcttctagagtgcagttctt 12287805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 363
Target Start/End: Original strand, 14735690 - 14735782
Alignment:
Q  271 gtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctg 363  Q
    ||||||| ||||||| ||| ||||  ||||| ||||||| | |||| |||||||||||||||||| ||| | ||||| || ||||||| ||||    
T  14735690 gtaccccatttccacaacaacaaccaaattctaattgatataatacacctaatatagtatataagaaaaatctggggaatgccatggcccctg 14735782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 371
Target Start/End: Complemental strand, 5887939 - 5887872
Alignment:
Q  304 attgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 371  Q
    |||||| |||||| |||||| |||||||||||| || | |||||||| ||||||||||| ||| ||||    
T  5887939 attgatattatacacctaatgtagtatataagggaaatctgggggatgccatggcacctacctgcccc 5887872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 17303255 - 17303317
Alignment:
Q  304 attgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcct 366  Q
    |||||| |||||| ||||||||||||||||||| || | |||||||| ||||  |||||||||    
T  17303255 attgatattatacacctaatatagtatataagggaaatctgggggatgccataacacctgcct 17303317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 12288020 - 12287972
Alignment:
Q  148 ttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 196  Q
    ||||||||||||||| ||||||||||||||| |  | ||||||||||||    
T  12288020 ttggcatgtttatgccactatcattagaaatgttgaagatctccttaat 12287972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 13564708 - 13564783
Alignment:
Q  311 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 386  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  13564708 ttatactcttaatatagtatataaggaaactttggaggataccatggcacctaccgtcccccaaagagatccgccc 13564783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 13564588 - 13564625
Alignment:
Q  196 ttttttaaatacgatatgcaataatagaagattaaaca 233  Q
    |||||||||||| |||||||||||||||||||||||||    
T  13564588 ttttttaaatacaatatgcaataatagaagattaaaca 13564625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 26494525 - 26494421
Alignment:
Q  261 ccagttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcac 360  Q
    ||||||||||| ||||| || ||||| || ||||| ||||   |||||  |||||| ||||||||||||||||||| || | ||||||||  ||||||||    
T  26494525 ccagttcatggcacccc-ttaccactgcaacaactaaattattattgaaattatacacctaatatagtatataagggaaatctgggggatgtcatggcac 26494427  T
Q  361 ctgcct 366  Q
    ||||||    
T  26494426 ctgcct 26494421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 31523134 - 31523046
Alignment:
Q  276 ccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 364  Q
    ||||| ||||| ||| | || ||||| | ||| ||| |||| ||||||| | ||||||||||||||||||||||| ||||| |||||||    
T  31523134 cccttaccactgcagtagctgaattctagttgttgtaatacacctaatacaatatataaggaaactttgggggatgccatgacacctgc 31523046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 46852108 - 46852174
Alignment:
Q  272 taccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaa 338  Q
    |||| |||||||||| |||||||| ||||| ||||| | | |||| ||||||||| |||||||||||    
T  46852108 taccgcctttccactgcagcaactgaattctaattgttataatacacctaatataatatataaggaa 46852174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 29096168 - 29096115
Alignment:
Q  318 cctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 371  Q
    |||||||||||| |||||| || | |||||||| ||||||||||||||| ||||    
T  29096168 cctaatatagtaaataagggaaatctgggggatgccatggcacctgcctgcccc 29096115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 4870288 - 4870217
Alignment:
Q  125 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 196  Q
    |||||||||| ||||||||||  ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  4870288 ttaattcaagctcctctcaatgcttgacatgtttatgcaactatcattagaaatatcaacaatctccttaat 4870217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 3632018 - 3631947
Alignment:
Q  125 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 196  Q
    ||||||||||  |||||||||  ||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  3632018 ttaattcaagcccctctcaatgtttgacatgtttatgcaactatcattagaaacatcaacgatctccttaat 3631947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 371
Target Start/End: Original strand, 15974121 - 15974216
Alignment:
Q  276 ccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 371  Q
    ||||| |||||||| ||||| ||||   |||||  | |||| |||||||||||||||||||||| | | |||||| ||||||||||||||| ||||    
T  15974121 cccttaccactacaacaactaaattgttattgaaatcatacacctaatatagtatataaggaaaatctaggggatgccatggcacctgcctgcccc 15974216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 13106177 - 13106135
Alignment:
Q  154 tgtttatgcaactatcattagaaatatcaacgatctccttaat 196  Q
    ||||||||||| ||||||||||||||| |||||||||||||||    
T  13106177 tgtttatgcaattatcattagaaatattaacgatctccttaat 13106135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 18768380 - 18768440
Alignment:
Q  311 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 371  Q
    |||||| ||||||||||||||||||| ||   |||||||| ||||||||||||||| ||||    
T  18768380 ttatacacctaatatagtatataagggaaacctgggggatgccatggcacctgcctgcccc 18768440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 2977233 - 2977304
Alignment:
Q  125 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 196  Q
    |||||||||| ||||||||||  ||||||| ||||||| |||||| | | |||| |||| ||||||||||||    
T  2977233 ttaattcaagttcctctcaatgcttggcatttttatgccactatcgtaaaaaatgtcaaggatctccttaat 2977304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 13036187 - 13036145
Alignment:
Q  154 tgtttatgcaactatcattagaaatatcaacgatctccttaat 196  Q
    ||||||| |||||||||||| |||||| |||||||||||||||    
T  13036187 tgtttatacaactatcattaaaaatattaacgatctccttaat 13036145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 444
Target Start/End: Complemental strand, 10721327 - 10721279
Alignment:
Q  396 cgggcttggaagattttcttctcgctgatgcgtctagagtgcagttctt 444  Q
    |||| ||||||||||| ||||| |||||||| |||||||| ||||||||    
T  10721327 cgggtttggaagatttacttcttgctgatgcttctagagtacagttctt 10721279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 385
Target Start/End: Complemental strand, 35735 - 35661
Alignment:
Q  311 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 385  Q
    |||||| ||||||||||||||||||| || | |||||||| ||||||||| || || ||||  || |||||||||    
T  35735 ttatacacctaatatagtatataagggaaatctgggggatgccatggcacttggctgccccttaaaagatccgcc 35661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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