View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1956_high_5 (Length: 430)

Name: NF1956_high_5
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1956_high_5
NF1956_high_5
[»] chr3 (33 HSPs)
chr3 (1-362)||(11777148-11777510)
chr3 (143-340)||(26929306-26929506)
chr3 (151-299)||(6025713-6025859)
chr3 (149-289)||(21493654-21493795)
chr3 (209-340)||(53120115-53120247)
chr3 (209-299)||(33088683-33088773)
chr3 (209-339)||(13022644-13022775)
chr3 (184-299)||(26962660-26962777)
chr3 (338-421)||(2592052-2592135)
chr3 (335-420)||(55388065-55388150)
chr3 (345-425)||(2591629-2591709)
chr3 (212-339)||(38436340-38436468)
chr3 (337-421)||(17701964-17702048)
chr3 (345-425)||(36278954-36279034)
chr3 (337-421)||(52318362-52318446)
chr3 (345-425)||(34263807-34263887)
chr3 (345-422)||(52316981-52317058)
chr3 (345-425)||(48572987-48573067)
chr3 (375-425)||(11773092-11773142)
chr3 (345-421)||(17700520-17700596)
chr3 (345-421)||(19115191-19115267)
chr3 (209-289)||(20811058-20811138)
chr3 (345-421)||(45600983-45601059)
chr3 (357-420)||(48808380-48808443)
chr3 (339-421)||(33428480-33428562)
chr3 (345-422)||(53957677-53957753)
chr3 (345-421)||(55389514-55389590)
chr3 (338-425)||(47118092-47118179)
chr3 (352-418)||(19331117-19331183)
chr3 (346-425)||(50753820-50753899)
chr3 (351-421)||(19114541-19114611)
chr3 (375-421)||(47427892-47427938)
chr3 (375-411)||(36827530-36827566)
[»] chr6 (13 HSPs)
chr6 (152-299)||(13660432-13660581)
chr6 (181-339)||(10485694-10485857)
chr6 (151-295)||(11956064-11956212)
chr6 (149-339)||(17289605-17289802)
chr6 (149-340)||(19478732-19478933)
chr6 (181-299)||(3902858-3902978)
chr6 (151-292)||(29326239-29326383)
chr6 (181-339)||(17280894-17281055)
chr6 (337-425)||(30747993-30748081)
chr6 (232-340)||(28696923-28697035)
chr6 (340-420)||(31218952-31219032)
chr6 (345-420)||(31219206-31219281)
chr6 (209-247)||(14450663-14450701)
[»] chr4 (18 HSPs)
chr4 (149-339)||(24490689-24490884)
chr4 (153-324)||(10318188-10318360)
chr4 (209-339)||(10119873-10120004)
chr4 (213-299)||(653624-653710)
chr4 (340-421)||(47874561-47874642)
chr4 (151-242)||(8082773-8082865)
chr4 (345-420)||(42278051-42278126)
chr4 (345-421)||(31844724-31844800)
chr4 (345-421)||(47878529-47878605)
chr4 (340-415)||(53771100-53771175)
chr4 (375-420)||(54574457-54574502)
chr4 (346-425)||(26172983-26173062)
chr4 (340-422)||(4703261-4703343)
chr4 (335-389)||(26685494-26685548)
chr4 (215-338)||(17360069-17360194)
chr4 (345-422)||(53770335-53770412)
chr4 (391-424)||(54574847-54574880)
chr4 (336-420)||(39868915-39868999)
[»] scaffold0067 (1 HSPs)
scaffold0067 (149-340)||(33303-33498)
[»] chr2 (21 HSPs)
chr2 (151-295)||(43111474-43111618)
chr2 (150-332)||(42915165-42915357)
chr2 (345-425)||(31090166-31090246)
chr2 (221-340)||(5089672-5089792)
chr2 (345-425)||(17330271-17330351)
chr2 (345-425)||(2910102-2910182)
chr2 (340-421)||(39016424-39016507)
chr2 (339-421)||(32764934-32765016)
chr2 (339-421)||(32766284-32766366)
chr2 (340-422)||(39015002-39015084)
chr2 (340-425)||(24458057-24458142)
chr2 (349-425)||(24459487-24459563)
chr2 (345-421)||(31091572-31091648)
chr2 (345-424)||(40000376-40000455)
chr2 (245-337)||(39959770-39959863)
chr2 (338-421)||(5915037-5915120)
chr2 (345-425)||(7073641-7073721)
chr2 (346-422)||(34037717-34037793)
chr2 (339-425)||(2911532-2911618)
chr2 (385-421)||(14704048-14704084)
chr2 (375-415)||(15442022-15442062)
[»] chr8 (15 HSPs)
chr8 (209-339)||(19430628-19430759)
chr8 (209-339)||(19566777-19566908)
chr8 (209-339)||(19436070-19436201)
chr8 (209-339)||(19572219-19572350)
chr8 (212-339)||(13584765-13584893)
chr8 (213-339)||(33616135-33616261)
chr8 (335-421)||(35177387-35177473)
chr8 (209-299)||(31031194-31031282)
chr8 (339-421)||(32898490-32898572)
chr8 (345-421)||(10407629-10407705)
chr8 (336-422)||(1953014-1953099)
chr8 (336-421)||(41753991-41754076)
chr8 (345-420)||(41754841-41754915)
chr8 (345-421)||(35178849-35178925)
chr8 (384-425)||(1951984-1952024)
[»] chr1 (23 HSPs)
chr1 (209-315)||(31289374-31289481)
chr1 (209-339)||(13891400-13891531)
chr1 (209-339)||(38734721-38734852)
chr1 (209-340)||(26650495-26650626)
chr1 (151-339)||(39746674-39746872)
chr1 (181-340)||(12179295-12179462)
chr1 (211-339)||(10106636-10106765)
chr1 (345-422)||(32665814-32665891)
chr1 (345-424)||(52439481-52439560)
chr1 (340-418)||(9339643-9339721)
chr1 (209-286)||(14582397-14582474)
chr1 (335-425)||(7945595-7945685)
chr1 (340-425)||(10333227-10333312)
chr1 (345-421)||(10332988-10333064)
chr1 (345-425)||(5782416-5782496)
chr1 (345-421)||(7944159-7944233)
chr1 (340-425)||(9341066-9341151)
chr1 (245-297)||(19406284-19406336)
chr1 (340-424)||(22856677-22856761)
chr1 (375-421)||(5783154-5783200)
chr1 (376-425)||(52440600-52440649)
chr1 (395-425)||(6614020-6614050)
chr1 (215-338)||(14724903-14725027)
[»] chr7 (28 HSPs)
chr7 (209-297)||(24529028-24529116)
chr7 (212-339)||(7357929-7358057)
chr7 (185-299)||(47762349-47762462)
chr7 (212-339)||(28291912-28292040)
chr7 (209-299)||(33226955-33227045)
chr7 (148-289)||(9973915-9974065)
chr7 (345-425)||(30925049-30925129)
chr7 (345-421)||(43457459-43457535)
chr7 (335-425)||(10899114-10899204)
chr7 (345-424)||(48647485-48647564)
chr7 (345-421)||(35729131-35729207)
chr7 (345-425)||(44333141-44333221)
chr7 (337-421)||(44334494-44334578)
chr7 (340-418)||(48777253-48777331)
chr7 (345-421)||(48646051-48646127)
chr7 (345-420)||(45583686-45583761)
chr7 (339-425)||(7258271-7258357)
chr7 (340-425)||(35727696-35727781)
chr7 (345-425)||(46286505-46286585)
chr7 (340-413)||(21062814-21062887)
chr7 (345-421)||(7259729-7259805)
chr7 (355-425)||(8374926-8374996)
chr7 (345-425)||(34704911-34704991)
chr7 (383-423)||(44529068-44529108)
chr7 (345-425)||(48788713-48788793)
chr7 (340-421)||(12223744-12223825)
chr7 (340-421)||(42477378-42477459)
chr7 (339-423)||(8048827-8048911)
[»] scaffold0011 (2 HSPs)
scaffold0011 (209-299)||(7516-7607)
scaffold0011 (209-339)||(2221-2353)
[»] scaffold0132 (2 HSPs)
scaffold0132 (209-299)||(2488-2578)
scaffold0132 (209-299)||(10448-10538)
[»] chr5 (24 HSPs)
chr5 (211-340)||(7805667-7805797)
chr5 (211-339)||(14374719-14374848)
chr5 (213-339)||(13582053-13582180)
chr5 (345-421)||(8074453-8074529)
chr5 (345-421)||(2464671-2464747)
chr5 (339-421)||(546081-546162)
chr5 (345-421)||(4592863-4592939)
chr5 (335-418)||(28591162-28591245)
chr5 (345-425)||(9538090-9538170)
chr5 (345-421)||(18400192-18400268)
chr5 (345-413)||(40612712-40612780)
chr5 (339-421)||(21069285-21069367)
chr5 (336-413)||(13651173-13651249)
chr5 (340-425)||(25590428-25590512)
chr5 (345-421)||(2466819-2466895)
chr5 (215-299)||(9361776-9361858)
chr5 (375-420)||(19182982-19183027)
chr5 (252-338)||(31987343-31987430)
chr5 (340-410)||(14891199-14891269)
chr5 (375-425)||(16611760-16611810)
chr5 (389-421)||(4594144-4594176)
chr5 (353-421)||(9537033-9537101)
chr5 (381-425)||(19186261-19186305)
chr5 (340-388)||(24900410-24900458)
[»] scaffold0034 (1 HSPs)
scaffold0034 (345-421)||(116057-116133)
[»] scaffold0039 (2 HSPs)
scaffold0039 (345-421)||(79075-79151)
scaffold0039 (346-421)||(74358-74433)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 11777510 - 11777148
Alignment:
Q  1 cattgtttttgagttttagccattcactcatttacaccttaccaacaattaacatgagaaagtctcccccaatatttgaattttaactcactcctgatct 100  Q
    |||||||||||||||||||||||||||||||||| | |  ||||| |||||| |||||||||||||| | ||||||||||||  |||||||||||||       
T  11777510 cattgtttttgagttttagccattcactcatttaaaacggaccaaaaattaaaatgagaaagtctccacaaatatttgaattggaactcactcctgagag 11777411  T
Q  101 gcctcccagttcattaaactattctcttttcatatatatgtaagggtaattgttggaacactcgttgattctagtggaagttggatagaaaaacacatgg 200  Q
    ||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11777410 gcaagccagttcattaaaatattctcttttcatatatatgtaagggtaattgttggaacactcgttgattctagtggaagttggatagaaaaacacatgg 11777311  T
Q  201 taagaactagtg--tgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc 298  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||    
T  11777310 taagaactagtgtgtgtgacttaaaaatgtcccacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaaggcagtcccc 11777211  T
Q  299 taaggtacccacgtttgcgaatgggtgagcgcttagaaaaatgaggaaatagtcactttagtcc 362  Q
    | |  ||||||| ||||||||||| |||| |||| |||||||||||||||||||||||||||||    
T  11777210 t-atttacccacttttgcgaatggatgagtgcttggaaaaatgaggaaatagtcactttagtcc 11777148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 143 - 340
Target Start/End: Complemental strand, 26929506 - 26929306
Alignment:
Q  143 agggtaattgttggaacactcgttgattctagtggaag--ttggatagaaaaacacatggtaagaactagtgtgtgacttaaaaatgtcctacattggtg 240  Q
    |||||||||||||||||| | ||| ||||||||  ||   ||||||||||||||| |  |||||||||||||||||||||||||||||   |||||||||    
T  26929506 agggtaattgttggaacattagttaattctagtcaaaaaattggatagaaaaacataatgtaagaactagtgtgtgacttaaaaatgtttcacattggtg 26929407  T
Q  241 agccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacccacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    ||  |||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |  ||||||||| |||||||| |||| ||||||||||||||    
T  26929406 agttacaccaactagcaagtgtttatataagggtggggtgacctccaagtgtgtgcccttggggtacccacttttgcgaacgggtaagcgcttagaaaaa 26929307  T
Q  340 t 340  Q
    |    
T  26929306 t 26929306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 151 - 299
Target Start/End: Complemental strand, 6025859 - 6025713
Alignment:
Q  151 tgttggaacactcgttgattctagtggaagttggatagaaaaacacatggtaagaactagtgtgtgacttaaaaatgtcctacattggtgagccacacta 250  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||| ||||| ||   |||||||| |||||||||||  ||||||||||| |||||||    
T  6025859 tgttggaacactagttaattctagtggaagttggaaagaaaaacacaaggtaaaaat--gtgtgtgatttaaaaatgtctcacattggtgagtcacacta 6025762  T
Q  251 actagcaagtgtttatataagggtagggtgacctccaagggtgtgccct 299  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  6025761 actagcaagtgtttatataaggatggggtgacctccaaggatgtgccct 6025713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 149 - 289
Target Start/End: Original strand, 21493654 - 21493795
Alignment:
Q  149 attgttggaacactcgttgattctagtggaagttggatagaaaaacacatggtaagaactagtgtgtgacttaaaaatgtcctacattggtgagccacac 248  Q
    ||||| |||||||| ||| ||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||  ||||| |||||||| ||    
T  21493654 attgtcggaacactagttaattatagtggaagttggatagaaaaacacaaggtaaaaactagtgtttgacttaaaaatgtctcacatttgtgagccaaac 21493753  T
Q  249 taactagcaagt-gtttatataagggtagggtgacctccaag 289  Q
     ||||||||| |  ||||||||||||| ||||||||||||||    
T  21493754 aaactagcaactattttatataagggtggggtgacctccaag 21493795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 209 - 340
Target Start/End: Complemental strand, 53120247 - 53120115
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacc 307  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||  ||||||||||||||||||||| |  ||||||    
T  53120247 agtgtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataagggtacagtgacctccaagggtgtgcccttggggtacc 53120148  T
Q  308 cacgtttgcgaatgggtgagcgcttagaaaaat 340  Q
    ||| |||| |||  ||||| |||||| ||||||    
T  53120147 cacttttgtgaacaggtgaacgcttacaaaaat 53120115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 33088683 - 33088773
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccct 299  Q
    |||||||||||||||||||||| |||||||||||||| || |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  33088683 agtgtgtgacttaaaaatgtcccacattggtgagccaaaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgccct 33088773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 13022775 - 13022644
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtg-ccctaaggtacc 307  Q
    |||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||||||||| || |||||||||||||||||| || |  ||||||    
T  13022775 agtgtgtgacttaaaaatgtcccacattggtgagccacaccaattagaaagtgtttatataagggaagagtgacctccaagggtgtgaccttggggtacc 13022676  T
Q  308 cacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    ||| |||| ||| |||||| |||||| |||||    
T  13022675 cacttttgtgaacgggtgaacgcttacaaaaa 13022644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 26962777 - 26962660
Alignment:
Q  184 gatagaaaaacacatggtaagaactagtgtgtg--acttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtga 281  Q
    ||||||||||||||  |||| ||||||||||||  ||||||||| |||  ||||||||||||||||| |||||| |||||||||||||||||||| ||||    
T  26962777 gatagaaaaacacaatgtaaaaactagtgtgtgtgacttaaaaaagtctcacattggtgagccacaccaactagaaagtgtttatataagggtagagtga 26962678  T
Q  282 cctccaagggtgtgccct 299  Q
    ||| ||||||||||||||    
T  26962677 ccttcaagggtgtgccct 26962660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 2592135 - 2592052
Alignment:
Q  338 aatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  2592135 aatgagcaaatagtcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 2592052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 335 - 420
Target Start/End: Original strand, 55388065 - 55388150
Alignment:
Q  335 aaaaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagt 420  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||| ||  ||||||||||||||||||||||||||    
T  55388065 aaaaatgagcaaatagtcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagt 55388150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 2591629 - 2591709
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||||||||||||||||||||||||||| ||| |||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  2591629 aaatagtcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtctctg 2591709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 212 - 339
Target Start/End: Original strand, 38436340 - 38436468
Alignment:
Q  212 gtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgc-cctaaggtacccac 310  Q
    ||||||||||||||||||| ||||||||||||||||  |||||  |||||||||||||||||||| |||||| |||| ||||||| | || |||||||||    
T  38436340 gtgtgacttaaaaatgtcccacattggtgagccacatcaactaaaaagtgtttatataagggtagagtgaccaccaaaggtgtgctcttagggtacccac 38436439  T
Q  311 gtttgcgaatgggtgagcgcttagaaaaa 339  Q
     |||| ||| |||||| |||||| |||||    
T  38436440 ttttgtgaacgggtgaacgcttacaaaaa 38436468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 337 - 421
Target Start/End: Complemental strand, 17702048 - 17701964
Alignment:
Q  337 aaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||||||| |||| ||| ||||||| |||||||||||||||||||    
T  17702048 aaatgagtaaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtc 17701964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 36278954 - 36279034
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||||||||||||||||||||||| | | ||||| |||||||||| ||| ||| |||||||||||||||||||||||||||    
T  36278954 aaatagtcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatacaaataagtctctg 36279034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 421
Target Start/End: Complemental strand, 52318446 - 52318362
Alignment:
Q  337 aaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||||| ||||||||||||| ||| |||| |||||   |||||||||||||||||| |||||||||||||||||||||||||||    
T  52318446 aaatgagcaaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtc 52318362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 34263807 - 34263887
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||||||||| | |||||| |||||  |||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  34263807 aaatagtcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctg 34263887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 422
Target Start/End: Original strand, 52316981 - 52317058
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtct 422  Q
    ||||| ||||||||||| |||||||||| ||||||||||| |||| ||  ||||||| ||||||||||||||||||||    
T  52316981 aaataatcactttagtctctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaataagtct 52317058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 48572987 - 48573067
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||||||||| |||||||| |||||  |||| | |||||||| ||| ||||||||||||||||||||||||| |||||    
T  48572987 aaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctg 48573067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 11773142 - 11773092
Alignment:
Q  375 ctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  11773142 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtctctg 11773092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 17700520 - 17700596
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||||||||  ||| |||||  |||| |||||||||| | | |||||||||||||||||||||||||||    
T  17700520 aaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtc 17700596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 19115267 - 19115191
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||||||| | ||| |||||  |||| |||||||||| ||||| ||||||||||||||||||| |||||    
T  19115267 aaatagtcactttagttcgtgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagtc 19115191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 20811138 - 20811058
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaag 289  Q
    |||||||||||||||||||||| |||||||| | |||||  |||||  |||||||||||||| ||||| ||||| ||||||    
T  20811138 agtgtgtgacttaaaaatgtcccacattggtaaaccacatcaactaaaaagtgtttatataaaggtagagtgacttccaag 20811058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 45601059 - 45600983
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||| ||||||||||||||||| ||||   ||||||||||||||| ||| ||| ||||||||||||||||| |||||    
T  45601059 aaatcgtcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagtc 45600983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 420
Target Start/End: Original strand, 48808380 - 48808443
Alignment:
Q  357 tagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagt 420  Q
    |||||||||||||||| ||||||||| | |||| ||  ||||||||||||||||||||||||||    
T  48808380 tagtccctgattctgcagctcgctgttagataggtctctgactcaggattaaatacaaataagt 48808443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 421
Target Start/End: Complemental strand, 33428562 - 33428480
Alignment:
Q  339 atgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||| |||| |||||||| |||||||| |||||  |||| |||||||||| ||| |||||||| |||||||||||| |||||    
T  33428562 atgagcaaatggtcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtc 33428480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 422
Target Start/End: Original strand, 53957677 - 53957753
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtct 422  Q
    |||||||||||||||| | |||||||||  |||||||| |||||| | | |||||||||| |||||||||||||||||    
T  53957677 aaatagtcactttagtacttgattctgcaactcgctgttacataggttcctgactcagga-taaatacaaataagtct 53957753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 55389590 - 55389514
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||||||||||| |||||| | |||||  ||||||||||||||| || ||||||||  ||||||||||| ||||||    
T  55389590 aaatagtcactttggtccctaactctgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtc 55389514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 425
Target Start/End: Complemental strand, 47118179 - 47118092
Alignment:
Q  338 aatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||||| |||| ||||||||||||||||| |||||  |||| ||||| |||  |||  ||||||||||||||| |||| |||||||||    
T  47118179 aatgagcaaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctg 47118092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 418
Target Start/End: Original strand, 19331117 - 19331183
Alignment:
Q  352 cactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataa 418  Q
    |||||| || ||||| |||||  || |||||||||||| ||| ||||||||||||||||||||||||    
T  19331117 cactttcgttcctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataa 19331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 425
Target Start/End: Original strand, 50753820 - 50753899
Alignment:
Q  346 aatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||||||||||||||||||   |||||  ||||||||||||||| ||| | | ||||||||||||| ||| |||| ||||    
T  50753820 aatagtcactttagtccctagctctgcacctcgctgtcacataggtccctaattcaggattaaatataaacaagtttctg 50753899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 19114541 - 19114611
Alignment:
Q  351 tcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||||||| |||||   ||| ||||||| || ||| ||||||| ||||||||||||| |||||    
T  19114541 tcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtc 19114611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 47427892 - 47427938
Alignment:
Q  375 ctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||||||||||||| |||||||||||  |||||||||||| |||||    
T  47427892 ctcgctgtcacataggtccttgactcaaaattaaatacaaagaagtc 47427938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 36827566 - 36827530
Alignment:
Q  375 ctcgctgtcacatagatccttgactcaggattaaata 411  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  36827566 ctcgctgtgacaaagatccttgactcaggattaaata 36827530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 152 - 299
Target Start/End: Complemental strand, 13660581 - 13660432
Alignment:
Q  152 gttggaacactcgttgattctagtggaagttggatagaaaaacacatggtaagaactagtgtgtg--acttaaaaatgtcctacattggtgagccacact 249  Q
    ||||||||||| ||| |||||||||||||||||||||||||||| | ||||||||||||||||||  |||||||||| || || ||||||||||||||||    
T  13660581 gttggaacactagttaattctagtggaagttggatagaaaaacataaggtaagaactagtgtgtgtgacttaaaaatatcttatattggtgagccacact 13660482  T
Q  250 aactagcaagtgtttatataagggtagggtgacctccaagggtgtgccct 299  Q
    ||||||||||||||||||||||||| || |||||||||| ||||||||||    
T  13660481 aactagcaagtgtttatataagggtgggatgacctccaaaggtgtgccct 13660432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 181 - 339
Target Start/End: Complemental strand, 10485857 - 10485694
Alignment:
Q  181 ttggatagaaaaacacatggtaagaactagtgtgtg----acttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtag 276  Q
    |||||||||||||||||  |||||||||||||||||    |||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||    
T  10485857 ttggatagaaaaacacaatgtaagaactagtgtgtgtgagacttaaaaatgttccacattggtgagccacaccaactagcaagtgtttatataagggtag 10485758  T
Q  277 ggtgacctccaagggtgtgccc-taaggtacccacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
     ||||| ||||||||||||||| | ||||||| || ||||||||| ||||||||||||||||||    
T  10485757 agtgacatccaagggtgtgcccttgaggtacctacttttgcgaataggtgagcgcttagaaaaa 10485694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 151 - 295
Target Start/End: Original strand, 11956064 - 11956212
Alignment:
Q  151 tgttggaacactcgttgattctagtggaagttggatagaaaaacacatggtaagaactagtgtgtg----acttaaaaatgtcctacattggtgagccac 246  Q
    |||||||||||| ||||||||||||||||||||||||||||||  || ||||||||||||||||||    |||||||||||| | |||| ||||||||||    
T  11956064 tgttggaacactagttgattctagtggaagttggatagaaaaatgcaaggtaagaactagtgtgtgtatgacttaaaaatgttccacataggtgagccac 11956163  T
Q  247 actaactagcaagtgtttatataagggtagggtgacctccaagggtgtg 295  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||| ||||    
T  11956164 actaactagaaagtgtttatataagggtggggtgacctacaaggatgtg 11956212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 149 - 339
Target Start/End: Original strand, 17289605 - 17289802
Alignment:
Q  149 attgttggaacactcgttgattctagtgg--aagttggatagaaaaacacatggtaagaactagtgt----gtgacttaaaaatgtcctacattggtgag 242  Q
    |||||||||||||| ||||| |||||||   || |||||||||||||||||  ||||||||||||||    ||||||||||||||||| |||||||||||    
T  17289605 attgttggaacactagttgaatctagtgagaaaattggatagaaaaacacaatgtaagaactagtgtgtgtgtgacttaaaaatgtcccacattggtgag 17289704  T
Q  243 ccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccctaag-gtacccacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    |||||| ||| ||||||||||||||||||||||| ||||| ||||||| ||||||||  |  ||||||| ||||||||  |||||||||||| |||||    
T  17289705 ccacaccaacaagcaagtgtttatataagggtagagtgacatccaaggatgtgcccttggactacccacttttgcgaacaggtgagcgcttacaaaaa 17289802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 149 - 340
Target Start/End: Complemental strand, 19478933 - 19478732
Alignment:
Q  149 attgttggaacactcgttgattctagtgg--aagttggata-gaaaaacacatggtaagaactagtgtg------tgacttaaaaatgtcctacattggt 239  Q
    |||||||||||||| ||||| |||||||   || ||||||| ||||||||||  |||||||||||||||      |||||||||||||||| ||||||||    
T  19478933 attgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggt 19478834  T
Q  240 gagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacccacgtttgcgaatgggtgagcgcttagaaaa 338  Q
    ||||||||| |||||| |||||||||||||||||||| || |||||||||||||||||| |  ||||||||| |||| ||| |||||| |||||| ||||    
T  19478833 gagccacaccaactagaaagtgtttatataagggtagagtaacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 19478734  T
Q  339 at 340  Q
    ||    
T  19478733 at 19478732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 299
Target Start/End: Complemental strand, 3902978 - 3902858
Alignment:
Q  181 ttggatagaaaaacacatggtaagaactagtgtgtga--cttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtaggg 278  Q
    ||||||||||||||||   || |||||||||||||||  ||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||| |||    
T  3902978 ttggatagaaaaacactatgtgagaactagtgtgtgagacttaaaaatgtcctacattggtgaatcacaccaactagcaagtgtttatataagggtgggg 3902879  T
Q  279 tgacctccaagggtgtgccct 299  Q
    |||||||||||||||||||||    
T  3902878 tgacctccaagggtgtgccct 3902858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 29326383 - 29326239
Alignment:
Q  151 tgttggaacactcgttgattctagtggaa-gttggatagaaaaacacatggtaagaactagtgtg--tgacttaaaaatgtcctacattggtgagccaca 247  Q
    |||||||||||| ||| ||||||||| || |||||||||||||||||   ||||||| |||||||  |||||||||||||||  ||||||||||| ||||    
T  29326383 tgttggaacactagttaattctagtgaaaagttggatagaaaaacactatgtaagaattagtgtgcgtgacttaaaaatgtctcacattggtgaggcaca 29326284  T
Q  248 ctaactagcaagtgtttatataagggtagggtgacctccaagggt 292  Q
    | ||||||||||||||||||||||||| |||||||||||||||||    
T  29326283 ccaactagcaagtgtttatataagggtggggtgacctccaagggt 29326239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 339
Target Start/End: Original strand, 17280894 - 17281055
Alignment:
Q  181 ttggatagaaaaacacatggtaagaactagtgt--gtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtaggg 278  Q
    ||||||||||||| | |  ||||||||||||||  |||||||||||||||   |||||||||||||| |  ||||||||||||||||||||||||||| |    
T  17280894 ttggatagaaaaatagaatgtaagaactagtgtgtgtgacttaaaaatgtttcacattggtgagccatatcaactagcaagtgtttatataagggtagag 17280993  T
Q  279 tgacctccaagggtgtgccctaag-gtacccacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    |||||||||||||||||||||  | |||||||| ||||| || ||||||||||||| |||||    
T  17280994 tgacctccaagggtgtgcccttcgcgtacccacttttgcaaacgggtgagcgcttacaaaaa 17281055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 337 - 425
Target Start/End: Original strand, 30747993 - 30748081
Alignment:
Q  337 aaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||| ||||| ||||||||||||||| |||||||||    
T  30747993 aaatgagcaaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctg 30748081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 340
Target Start/End: Original strand, 28696923 - 28697035
Alignment:
Q  232 acattggtgagccacactaactagcaagtgt---ttatataagggtagggtgacctccaagggtgtgc-cctaaggtacccacgtttgcgaatgggtgag 327  Q
    |||||||||||| |||| |||||||||||||   |||||||||||| |||||||||| |||||||||| | |  ||||||||| ||||  || | |||||    
T  28696923 acattggtgagcaacaccaactagcaagtgtttattatataagggtggggtgacctctaagggtgtgcacttggggtacccacttttgtaaacgagtgag 28697022  T
Q  328 cgcttagaaaaat 340  Q
    |||||||||||||    
T  28697023 cgcttagaaaaat 28697035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 420
Target Start/End: Original strand, 31218952 - 31219032
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagt 420  Q
    |||| |||| ||||||||| || |||| |||||  ||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  31218952 tgagcaaatggtcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagt 31219032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 420
Target Start/End: Complemental strand, 31219281 - 31219206
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagt 420  Q
    |||| ||||||||| ||||||| |||||  ||||||||||||||| || || ||||||||||||||||||| ||||    
T  31219281 aaatggtcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagt 31219206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 14450663 - 14450701
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccaca 247  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  14450663 agtgtgtgacttaaaaatgtcccacattgatgagccaca 14450701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 149 - 339
Target Start/End: Complemental strand, 24490884 - 24490689
Alignment:
Q  149 attgttggaacactcgttgattctagtgg--aagttggatagaaaaacacatggtaagaactagtgtgtg--acttaaaaatgtcctacattggtgagcc 244  Q
    |||||||||||||| ||| | |||||||   || |||||||||||||||||  |||||||||||||||||  |||||||||||||| | ||||| |||||    
T  24490884 attgttggaacactagttaaatctagtgagaaaattggatagaaaaacacaatgtaagaactagtgtgtgtaacttaaaaatgtcccatattggagagcc 24490785  T
Q  245 acactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacccacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| || |||||||| |||||||| ||||||||||    
T  24490784 acaccaactagcaagtgtttatataagggtagagtgacctccaagggtgtgcccttgaggtacctacatttgcgaacgggtgagcacttagaaaaa 24490689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 153 - 324
Target Start/End: Original strand, 10318188 - 10318360
Alignment:
Q  153 ttggaacactcgttgattctagtggaa-gttggatagaaaaacacatggtaagaactagtgtgtgacttaaaaatgtcctacattggtgagccacactaa 251  Q
    ||||||| || ||| ||||||||| || |||||||||||||||||   |||| ||||||||||||| |||||||||||  |||||| |||||||||| ||    
T  10318188 ttggaacccttgttaattctagtgaaaagttggatagaaaaacactatgtaataactagtgtgtgatttaaaaatgtctcacattgatgagccacaccaa 10318287  T
Q  252 ctagcaagtgtttatataagggtagggtgacctccaagggtgtgccctaaggtacccacgtttgcgaatgggt 324  Q
    ||| |||||| |||||||||||| || ||||||||||||||||||| |  ||||||||| ||| |||||||||    
T  10318288 ctaacaagtgattatataagggtgggatgacctccaagggtgtgccttggggtacccacttttacgaatgggt 10318360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 209 - 339
Target Start/End: Original strand, 10119873 - 10120004
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacc 307  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||| |  ||||||    
T  10119873 agtgtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtacccttggggtacc 10119972  T
Q  308 cacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    ||| |||| ||| |||||| |||||| |||||    
T  10119973 cacttttgtgaacgggtgaacgcttacaaaaa 10120004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 213 - 299
Target Start/End: Complemental strand, 653710 - 653624
Alignment:
Q  213 tgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccct 299  Q
    |||||||||||||||||| |||||||| || ||| | |||||| ||||||||||||||||| || ||||||||||||||||||||||    
T  653710 tgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgccct 653624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 421
Target Start/End: Original strand, 47874561 - 47874642
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||| ||||||||||||||||| |||||||||| ||||||| |||||||| ||| ||||||| |||||||||||||||||||    
T  47874561 tgagtaaatagtcactttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtc 47874642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 8082773 - 8082865
Alignment:
Q  151 tgttggaacactcgttgattctagtggaa-gttggatagaaaaacacatggtaagaactagtgtgtgacttaaaaatgtcctacattggtgag 242  Q
    |||||||||||| ||| ||||||||| || |||||||||||||||||   |||||||||||||||||||||||||||| || |||||||||||    
T  8082773 tgttggaacactagttaattctagtgaaaagttggatagaaaaacactatgtaagaactagtgtgtgacttaaaaatgccccacattggtgag 8082865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 420
Target Start/End: Original strand, 42278051 - 42278126
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagt 420  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||| ||| |||||| |||||||||||||||||||    
T  42278051 aaatagtcactttagtccttgattctgcagcttgctgtcacataggtccctgactcgggattaaatacaaataagt 42278126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 31844724 - 31844800
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||||||||||||||||||   |||||  ||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  31844724 aaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtc 31844800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 47878605 - 47878529
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||||  ||||||| |||||  |||||||| |||||| ||| |||||| ||||||||||||||||||||    
T  47878605 aaatagtcactttgatccctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtc 47878529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 415
Target Start/End: Complemental strand, 53771175 - 53771100
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaa 415  Q
    |||| |||| ||||||||||||||||| |||||  |||| |||||||||| ||| |||||||| ||||||||||||    
T  53771175 tgagcaaatggtcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaa 53771100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 54574457 - 54574502
Alignment:
Q  375 ctcgctgtcacatagatccttgactcaggattaaatacaaataagt 420  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||||    
T  54574457 ctcgctgtcacataggtctctgactcaggattaaatacaaataagt 54574502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 425
Target Start/End: Complemental strand, 26173062 - 26172983
Alignment:
Q  346 aatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||||||||||||||  | | |||  ||  |||||| | || ||||||||||| |||||||||||||||||||||||    
T  26173062 aatagtcactttagtccccaactatgcaccttactgtcagaaaggtccttgactcaagattaaatacaaataagtctctg 26172983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 422
Target Start/End: Complemental strand, 4703343 - 4703261
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtct 422  Q
    |||| |||| |||||||||||  |||| ||| |  ||||||||||||||| ||| | |||||| |||||||||||| ||||||    
T  4703343 tgagcaaattgtcactttagttactgactctacatctcgctgtcacataggtccctaactcagaattaaatacaaagaagtct 4703261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 26685548 - 26685494
Alignment:
Q  335 aaaaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatag 389  Q
    |||||||||||||| || | |||||||||||| |||||  |||||||||||||||    
T  26685548 aaaaatgaggaaatggttattttagtccctgactctgcacctcgctgtcacatag 26685494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 338
Target Start/End: Complemental strand, 17360194 - 17360069
Alignment:
Q  215 tgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacccacgtt 313  Q
    |||||||| ||||||||||||||  ||| || |||| |||| || |||||||||||  |  ||||| | ||||| ||||||||| |  ||||||||| ||    
T  17360194 tgacttaagaatgtcctacattgaagagacatactatctagtaaatgtttatataaatggggggtggcttccaaaggtgtgcccttggggtacccacttt 17360095  T
Q  314 tgcgaatggg-tgagcgcttagaaaa 338  Q
    | |||| ||| |||||||||||||||    
T  17360094 tacgaacgggatgagcgcttagaaaa 17360069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 422
Target Start/End: Original strand, 53770335 - 53770412
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtct 422  Q
    |||| |||||||||||| |||| |||||  |||||  |||||||| | | |||||||| |||||||||||| ||||||    
T  53770335 aaatggtcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaagaagtct 53770412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 54574880 - 54574847
Alignment:
Q  391 tccttgactcaggattaaatacaaataagtctct 424  Q
    |||||||||||||||||||||||||||| |||||    
T  54574880 tccttgactcaggattaaatacaaataaatctct 54574847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 420
Target Start/End: Original strand, 39868915 - 39868999
Alignment:
Q  336 aaaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagt 420  Q
    |||||||| |||| || ||||||||| |||| |||||  |||||||| ||| || ||| |||||||  |||||||||||| ||||    
T  39868915 aaaatgagtaaattgttactttagtctctgactctgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagt 39868999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 149 - 340
Target Start/End: Original strand, 33303 - 33498
Alignment:
Q  149 attgttggaacactcgttgattctagtggaag-ttggatagaaaaacacatggtaagaactagtgt--gtgacttaaaaatgtcctacattggtgagcca 245  Q
    |||||||||| ||| ||| ||||||||| ||  |||||||||||||||||  ||||||||||||||  ||||||||||||||||| |||||| |||||||    
T  33303 attgttggaatactagttaattctagtgaaaaattggatagaaaaacacaatgtaagaactagtgtgtgtgacttaaaaatgtcccacattgatgagcca 33402  T
Q  246 cactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccctaagg-tacccacgtttgcgaatgggtgagcgcttagaaaaat 340  Q
    ||| |||||||||||||||||||||| || |||||| ||||||||||||||| |  || ||||||| |||| ||| ||||||||||||||||||||    
T  33403 caccaactagcaagtgtttatataagagtggggtgagctccaagggtgtgccattgggatacccacttttgtgaacgggtgagcgcttagaaaaat 33498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 151 - 295
Target Start/End: Original strand, 43111474 - 43111618
Alignment:
Q  151 tgttggaacactcgttgattctagtggaagttggatagaaaaacacatggtaagaactagtgtgtgacttaaaaatgtcctacattggtgagccacacta 250  Q
    |||||||||||| ||| ||||||||||||||||||||||||||  || |||||||| ||  ||||||||||||||||||| | ||| ||||||||||| |    
T  43111474 tgttggaacactggttaattctagtggaagttggatagaaaaatgcaaggtaagaattaccgtgtgacttaaaaatgtcccatattagtgagccacacca 43111573  T
Q  251 actagcaagtgtttatataagggtagggtgacctccaagggtgtg 295  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||    
T  43111574 actagcaagtgtttatataagggtggggtgacctacaagggtgtg 43111618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 150 - 332
Target Start/End: Complemental strand, 42915357 - 42915165
Alignment:
Q  150 ttgttggaacactcgttgattctagtgg--aagttggata-gaaaaacacatggtaagaactagtgtg------tgacttaaaaatgtcctacattggtg 240  Q
    ||||||||||||| ||||| |||||||   || ||||||| ||||||||||  |||||||||||||||      |||||||||||||||| |||||||||    
T  42915357 ttgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 42915258  T
Q  241 agccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacccacgtttgcgaatgggtgagcgctt 332  Q
    |||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| |  ||||||||| |||| ||| |||||| |||||    
T  42915257 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgctt 42915165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 31090166 - 31090246
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  31090166 aaatagtcaatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctg 31090246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 221 - 340
Target Start/End: Complemental strand, 5089792 - 5089672
Alignment:
Q  221 aaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacccacgtttgcgaa 319  Q
    |||||||||| ||||||||||||||||| || ||| |||||||||||||||| ||| |||||||| |||||||||||| | | |||||||| |||| |||    
T  5089792 aaaaatgtcccacattggtgagccacaccaattagaaagtgtttatataaggatagagtgacctctaagggtgtgcccttgatgtacccacttttgtgaa 5089693  T
Q  320 tgggtgagcgcttagaaaaat 340  Q
     |||||| |||||| ||||||    
T  5089692 cgggtgaacgcttacaaaaat 5089672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 345 - 425
Target Start/End: Complemental strand, 17330351 - 17330271
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||||||| ||||||||| ||||||||| |||| ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  17330351 aaatagtcgctttagtccttgattctgcagctcactgtcacataggtccctgactcaggattaaatacaaataagtctctg 17330271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 2910102 - 2910182
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||| |||||||||||  ||||| ||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  2910102 aaataatcactttagtctttgattttgcagctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctg 2910182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 39016507 - 39016424
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatc-ct-tgactcaggattaaatacaaataagtc 421  Q
    |||| ||||||||||||||||| |||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  39016507 tgagcaaatagtcactttagtctctgattctgcagctcgctgtcacatacatctctctgactcaggattaaatacaaataagtc 39016424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 339 - 421
Target Start/End: Original strand, 32764934 - 32765016
Alignment:
Q  339 atgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||| |||||||||||||||||||||||||||| ||| | ||||| |||| ||  |||||||||||||||||||||||||||    
T  32764934 atgagtaaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtc 32765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 339 - 421
Target Start/End: Complemental strand, 32766366 - 32766284
Alignment:
Q  339 atgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||| ||||||||||||| |||||||| |||||  |||| |||||||||| ||| |||||||||||||||||||||||||||    
T  32766366 atgagcaaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtc 32766284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 340 - 422
Target Start/End: Original strand, 39015002 - 39015084
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtct 422  Q
    |||| ||||| ||||||| |||||||| |||||  ||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  39015002 tgagcaaataatcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatacaaatacgtct 39015084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 24458057 - 24458142
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||| |||||||||||||||||||||||| ||| ||||||| |||||||| ||| |||||||  ||||||||||||||||| ||||    
T  24458057 tgagcaaatagtcactttagtccctgattatgcagctcgctatcacataggtccctgactcaaaattaaatacaaataagtttctg 24458142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 24459563 - 24459487
Alignment:
Q  349 agtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||||| |||||||| |||||  ||||||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  24459563 agtcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctg 24459487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 31091648 - 31091572
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||||||||||| |||||||| |||||  || |||||||||||| ||| |||||||||||||||||||||||||||    
T  31091648 aaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtc 31091572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 345 - 424
Target Start/End: Complemental strand, 40000455 - 40000376
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctct 424  Q
    |||| |||||||| |||||||| |||||  |||||||| |||||||||| ||| | ||||||||||||||||||||||||    
T  40000455 aaattgtcactttggtccctgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctct 40000376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 337
Target Start/End: Complemental strand, 39959863 - 39959770
Alignment:
Q  245 acactaactagcaagtgtttatataagggtagggtgacctccaagggtgtg-ccctaaggtacccacgtttgcgaatgggtgagcgcttagaaa 337  Q
    |||| ||||| ||| ||||||||||||||| |||||||||||||||||||| || |  ||||||| | |||||||| |||||| ||||||||||    
T  39959863 acaccaactaacaaatgtttatataagggtggggtgacctccaagggtgtgtccttggggtacccgcttttgcgaacgggtgaacgcttagaaa 39959770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 5915120 - 5915037
Alignment:
Q  338 aatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||| |||||||||||||||||| ||| |||||  |||||| ||| |||| || ||||||||| |||||||||||| |||||    
T  5915120 aatgagcaaatagtcactttagtccatgactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtc 5915037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 7073641 - 7073721
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||||||||||||||||| | ||||||| |||  ||||| ||||| ||  ||| || ||||||||||||||||||||||||    
T  7073641 aaatagtcactttagtccttcattctgcagcttactgtcgcataggtctctgattcgggattaaatacaaataagtctctg 7073721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 34037793 - 34037717
Alignment:
Q  346 aatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtct 422  Q
    ||||||||||||||||| ||| |||||  || ||||||| | || ||| | ||||||||||||||||||||||||||    
T  34037793 aatagtcactttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtct 34037717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 425
Target Start/End: Complemental strand, 2911618 - 2911532
Alignment:
Q  339 atgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||| ||||||||||||| ||| ||| |||||| |||||||||||||||   || |||||||   ||||||| |||||||||||||    
T  2911618 atgagcaaatagtcactttggtctctggttctgcagctcgctgtcacataaggccatgactcaaagttaaatataaataagtctctg 2911532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 421
Target Start/End: Original strand, 14704048 - 14704084
Alignment:
Q  385 catagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  14704048 cataggtccctgactcaggattaaatacaaataagtc 14704084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 15442062 - 15442022
Alignment:
Q  375 ctcgctgtcacatagatccttgactcaggattaaatacaaa 415  Q
    |||||||||||| |||| | |||||||||||||||||||||    
T  15442062 ctcgctgtcacaaagattcctgactcaggattaaatacaaa 15442022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 19430759 - 19430628
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccctaagg-tacc 307  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||  || ||||    
T  19430759 agtgtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttgggatacc 19430660  T
Q  308 cacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    ||| |||| ||| |||||| |||||| |||||    
T  19430659 cacttttgtgaacgggtgaacgcttacaaaaa 19430628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 19566908 - 19566777
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccctaagg-tacc 307  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||  || ||||    
T  19566908 agtgtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttgggatacc 19566809  T
Q  308 cacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    ||| |||| ||| |||||| |||||| |||||    
T  19566808 cacttttgtgaacgggtgaacgcttacaaaaa 19566777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 19436201 - 19436070
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacc 307  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||  ||||||||||||||||||||| |  ||||||    
T  19436201 agtgtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataagggtaaagtgacctccaagggtgtgcccttggggtacc 19436102  T
Q  308 cacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    ||| |||| |||  ||||| |||||| |||||    
T  19436101 cacttttgtgaactggtgaacgcttacaaaaa 19436070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 19572350 - 19572219
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacc 307  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||  ||||||||||||||||||||| |  ||||||    
T  19572350 agtgtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataagggtaaagtgacctccaagggtgtgcccttggggtacc 19572251  T
Q  308 cacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    ||| |||| |||  ||||| |||||| |||||    
T  19572250 cacttttgtgaactggtgaacgcttacaaaaa 19572219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 13584893 - 13584765
Alignment:
Q  212 gtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacccac 310  Q
    |||||| |||||||||||| ||||||||||||||||| |||||| ||||||||||||| |||||| ||||| ||||||||||||||| |  |||||||||    
T  13584893 gtgtgatttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatatacgggtagagtgacatccaagggtgtgcccttggggtacccac 13584794  T
Q  311 gtttgcgaatgggtgagcgcttagaaaaa 339  Q
     |||| ||| |||||| |||||| |||||    
T  13584793 ttttgtgaacgggtgaacgcttacaaaaa 13584765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 213 - 339
Target Start/End: Original strand, 33616135 - 33616261
Alignment:
Q  213 tgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccctaaggtacccacgt 312  Q
    |||| ||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||||| || |||||||||||||||||||  ||||||||| |    
T  33616135 tgtggcttaaaaatgtctcacattggtgagccacaccaactagaaagtgtttatataagggtagagtaacctccaagggtgtgcccttgggtacccactt 33616234  T
Q  313 ttgcgaatgggtgagcgcttagaaaaa 339  Q
    ||  ||| || ||| |||||| |||||    
T  33616235 ttatgaacggatgaacgcttacaaaaa 33616261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 335 - 421
Target Start/End: Original strand, 35177387 - 35177473
Alignment:
Q  335 aaaaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||| |||| ||||||||| |||||||||| ||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  35177387 aaaattgagcaaatagtcaatttagtccctaattctgcagctcgctgtcacataggtccctgactccggattaaatacaaataagtc 35177473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 31031282 - 31031194
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccct 299  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||| ||  || ||||||||||||| ||||||||||||| ||||||||    
T  31031282 agtgtgtgacttaaaaatgtctcacattggtgagccacaccaactagaaa--gtatatataagggtagagtgacctccaaggatgtgccct 31031194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 339 - 421
Target Start/End: Complemental strand, 32898572 - 32898490
Alignment:
Q  339 atgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||| |||||||||||||||||||||| |||||  ||| ||||||||||| ||| ||||| |||||||||||||||||||||    
T  32898572 atgagcaaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtc 32898490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 10407705 - 10407629
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||||||||||||||| |||||||||| |||| ||||||||||| || |||||| ||||||||| |||||||||||    
T  10407705 aaatagtcactttagtctctgattctgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtc 10407629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 422
Target Start/End: Complemental strand, 1953099 - 1953014
Alignment:
Q  336 aaaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtct 422  Q
    |||| ||| |||||||||||||||||||||||||||| ||||| ||||| |||||||  ||||| ||||||| ||||||||||||||    
T  1953099 aaaaagagtaaatagtcactttagtccctgattctgcagctcgttgtcatatagatctctgact-aggattacatacaaataagtct 1953014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 41753991 - 41754076
Alignment:
Q  336 aaaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||| ||| ||||||||||||||||||||| ||||||  || |||||||||||| ||| ||||||||||||||||| ||| |||||    
T  41753991 aaaaggagcaaatagtcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtc 41754076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 345 - 420
Target Start/End: Complemental strand, 41754915 - 41754841
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagt 420  Q
    |||||||||||||| ||| |||||||||  ||||||||||||||||||  ||||||||||||||||||||| ||||    
T  41754915 aaatagtcactttaatcc-tgattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagt 41754841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 35178925 - 35178849
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||||||||||| |||||||| |||||   ||||||||| || | ||| |||||||||||||||||||||||||||    
T  35178925 aaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtc 35178849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 425
Target Start/End: Original strand, 1951984 - 1952024
Alignment:
Q  384 acatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  1951984 acatagatcct-gactcaggattaaatacaaataagtttctg 1952024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 209 - 315
Target Start/End: Complemental strand, 31289481 - 31289374
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacc 307  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||    
T  31289481 agtgtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttagggtacc 31289382  T
Q  308 cacgtttg 315  Q
    ||| ||||    
T  31289381 cacttttg 31289374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 13891531 - 13891400
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacc 307  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| || ||||||||||||| ||||||| | |||||||    
T  13891531 agtgtgtgacttaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataagggaagagtgacctccaaggatgtgcccttgaggtacc 13891432  T
Q  308 cacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    ||| |||| ||| ||||||  ||||| |||||    
T  13891431 cacttttgtgaacgggtgaatgcttacaaaaa 13891400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 38734852 - 38734721
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccctaagg-tacc 307  Q
    |||||||||||||||||||||| | ||||||||||||||| |||||| |||||||||||||||||||| ||||||| ||| |||||||||| ||| ||||    
T  38734852 agtgtgtgacttaaaaatgtcccatattggtgagccacaccaactagaaagtgtttatataagggtagagtgaccttcaaaggtgtgcccttaggatacc 38734753  T
Q  308 cacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    ||| |||| ||| |||||| |||||| |||||    
T  38734752 cacttttgtgaacgggtgaacgcttacaaaaa 38734721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 26650495 - 26650626
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacc 307  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||| ||||| |||||||||||||| ||||||||||||| ||||||| |  ||||||    
T  26650495 agtgtgtgacttaaaaatgtcccacattggtgagccacatcaactagaaagtg-ttatataagggtagagtgacctccaaggatgtgcccttggggtacc 26650593  T
Q  308 cacgtttgcgaatgggtgagcgcttagaaaaat 340  Q
    ||| |||| ||| |||||| |||||| ||||||    
T  26650594 cacttttgtgaacgggtgaacgcttacaaaaat 26650626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 151 - 339
Target Start/End: Original strand, 39746674 - 39746872
Alignment:
Q  151 tgttggaacactcgttgattctagtgg--aagttggata-gaaaaacacatggtaagaactagtg------tgtgacttaaaaatgtcctacattggtga 241  Q
    |||||||||||| ||||| |||||||   || ||||||| ||||||||||  |||||||||||||      ||||||||||||||||   | ||||||||    
T  39746674 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtttcatattggtga 39746773  T
Q  242 gccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacccacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    ||||||| |||||| |||||||||||||||||||| || |||||||||| ||||||| |||||||||||| |||| ||| | |||| |||||| |||||    
T  39746774 gccacaccaactagaaagtgtttatataagggtagagtaacctccaaggatgtgcccttaaggtacccacttttgtgaacgagtgaacgcttacaaaaa 39746872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 181 - 340
Target Start/End: Complemental strand, 12179462 - 12179295
Alignment:
Q  181 ttggatagaaaaacacatggtaagaactagtgtgtg--acttaaaaatgtcctacattggtgagcc----acactaactagcaagtgtttatataagggt 274  Q
    |||||||||||||||||  |||||||||||||||||  |||||||||| |||||||||||||||||    |||| |||||||||||||||||||||||||    
T  12179462 ttggatagaaaaacacaatgtaagaactagtgtgtgtgacttaaaaatatcctacattggtgagccacgtacaccaactagcaagtgtttatataagggt 12179363  T
Q  275 aggg-tgacctccaagggtgtgccctaagg-tacccacgtttgcgaatgggtgagcgcttagaaaaat 340  Q
     ||| |||||| |||| |||||||||  || |||||||  ||| ||| | |||||| |||||||||||    
T  12179362 ggggatgacctgcaagtgtgtgcccttgggatacccactgttgtgaacgagtgagcacttagaaaaat 12179295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 211 - 339
Target Start/End: Complemental strand, 10106765 - 10106636
Alignment:
Q  211 tgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtaccca 309  Q
    |||||||||||||||||||| |||||||| || ||| | |||||| ||||||||||||||||| || ||||||||||||||||||||| |  ||||||||    
T  10106765 tgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataaggggagagtgacctccaagggtgtgcccttggggtaccca 10106666  T
Q  310 cgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    | |||| ||| |||||| |||||| |||||    
T  10106665 cttttgtgaacgggtgaacgcttacaaaaa 10106636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 422
Target Start/End: Complemental strand, 32665891 - 32665814
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtct 422  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||  ||||||| ||||||||||||||||||||    
T  32665891 aaatagtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtct 32665814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 424
Target Start/End: Original strand, 52439481 - 52439560
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctct 424  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| ||  || |||||||||||||||| ||||||||||    
T  52439481 aaatagtcactttagcccctgattctgcagctcgctgtcacataggtctctggctcaggattaaatacagataagtctct 52439560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 9339643 - 9339721
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataa 418  Q
    |||| |||||||| ||||||||||||||||||| ||||| ||| |||||| ||| ||||||||||||||||||||||||    
T  9339643 tgagcaaatagtccctttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatacaaataa 9339721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 14582474 - 14582397
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctcc 286  Q
    |||||||||||||||||||||| |||||||||| |||||| |||||| || | ||||||||||||||| |||||||||    
T  14582474 agtgtgtgacttaaaaatgtcccacattggtgaaccacaccaactagaaattttttatataagggtagagtgacctcc 14582397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 7945685 - 7945595
Alignment:
Q  335 aaaaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||| |||| ||||| ||| ||| |||||||| |||||  ||||||||||||||| | | |||||||||||||||||||||||||||||||    
T  7945685 aaaattgagcaaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctg 7945595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 10333312 - 10333227
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||| ||||||||||| || || |||||||||| ||||||||| |||||| ||  ||||||| |||||||||||||||||||||||    
T  10333312 tgagcaaatagtcactataatctctgattctgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctg 10333227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 10332988 - 10333064
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||||||||||||| | |||  |||| |||||||||| ||||||| ||||||||||||| |||||||||    
T  10332988 aaatagtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtc 10333064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 5782416 - 5782496
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||| |||| |||||||||||| |||||  ||||||||||||||| ||  ||||||| ||||||||||||| |||||||||    
T  5782416 aaattgtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctg 5782496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 7944159 - 7944233
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||  ||||||||||| |||  ||||||||||||||| ||| |||||||  ||||||||||||||||||    
T  7944159 aaatagtcact--agtccctgattttgcaactcgctgtcacataggtccctgactcaaaattaaatacaaataagtc 7944233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 9341151 - 9341066
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||| |||||||||||||  ||  | |||||||  ||| || |||||||| ||| |||||||||||||||||||||||||||||||    
T  9341151 tgagcaaatagtcactttgatcatttattctgcatctcactatcacataggtccctgactcaggattaaatacaaataagtctctg 9341066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 19406284 - 19406336
Alignment:
Q  245 acactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgcc 297  Q
    |||| |||||| |||||||||||||||||||| |||||| |||||||||||||    
T  19406284 acaccaactagaaagtgtttatataagggtagagtgacccccaagggtgtgcc 19406336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 424
Target Start/End: Original strand, 22856677 - 22856761
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctct 424  Q
    |||| |||| |||||||||||| |||| |||||  | || ||| ||| |||| ||||||||||||||||||||||| ||||||||    
T  22856677 tgagcaaatggtcactttagtcactgactctgcaccacgttgttacaaagattcttgactcaggattaaatacaaagaagtctct 22856761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 5783200 - 5783154
Alignment:
Q  375 ctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||    
T  5783200 ctcgctgtcacatagatcctcgactcagaattaaatacaaagaagtc 5783154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 425
Target Start/End: Complemental strand, 52440649 - 52440600
Alignment:
Q  376 tcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||||||||||||| ||| ||| ||||||||||||| |||||||||||||    
T  52440649 tcgctgtcacataggtccctgagtcaggattaaatataaataagtctctg 52440600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 425
Target Start/End: Complemental strand, 6614050 - 6614020
Alignment:
Q  395 tgactcaggattaaatacaaataagtctctg 425  Q
    |||||||||||||||||||||||||||||||    
T  6614050 tgactcaggattaaatacaaataagtctctg 6614020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 338
Target Start/End: Complemental strand, 14725027 - 14724903
Alignment:
Q  215 tgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccctaagg-tacccacgtt 313  Q
    ||||||| ||| |||| ||||| | ||| || |||| || | ||||||||||||||| |  ||||||||| ||| | |||||| |  || ||||||| ||    
T  14725027 tgacttataaaggtcccacatttgagagtcatactacctggtaagtgtttatataagtggggggtgacctacaaagatgtgccattggggtacccacttt 14724928  T
Q  314 tgcgaatgggtgagcgcttagaaaa 338  Q
    || ||| ||||||||||||||||||    
T  14724927 tgggaacgggtgagcgcttagaaaa 14724903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 24529116 - 24529028
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgcc 297  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  24529116 agtgtgtgacttaaaaatatcctacattggtgagccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcc 24529028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 7358057 - 7357929
Alignment:
Q  212 gtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacccac 310  Q
    ||||||||||||||||||| | ||||||||||||||| || ||| |||||||||||||||||||| ||||||||||||| ||||||| | ||||||||||    
T  7358057 gtgtgacttaaaaatgtcccatattggtgagccacaccaattagaaagtgtttatataagggtagagtgacctccaaggatgtgcccttgaggtacccac 7357958  T
Q  311 gtttgcgaatgggtgagcgcttagaaaaa 339  Q
     |||| ||| |||||| |||||| |||||    
T  7357957 ttttgtgaacgggtgaacgcttacaaaaa 7357929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 299
Target Start/End: Complemental strand, 47762462 - 47762349
Alignment:
Q  185 atagaaaaacacatggtaagaactagtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacct 284  Q
    |||||||||||||  ||||||||||||||||||||||||||||| | ||||| ||||||||||| |||||| || ||||||||||| ||| |||||||||    
T  47762462 atagaaaaacacaatgtaagaactagtgtgtgacttaaaaatgttccacattagtgagccacaccaactagtaaatgtttatataaaggt-gggtgacct 47762364  T
Q  285 ccaagggtgtgccct 299  Q
    |||||| ||||||||    
T  47762363 ccaaggatgtgccct 47762349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 212 - 339
Target Start/End: Original strand, 28291912 - 28292040
Alignment:
Q  212 gtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacccac 310  Q
    ||||||||||||||||||| | |||||||||| |||| |||||| |||||||||||||||||||  ||||||||||||||||||||| |  |||||||||    
T  28291912 gtgtgacttaaaaatgtcccatattggtgagctacaccaactagaaagtgtttatataagggtatagtgacctccaagggtgtgcccttggggtacccac 28292011  T
Q  311 gtttgcgaatgggtgagcgcttagaaaaa 339  Q
     |||| ||| |||||| |||||| |||||    
T  28292012 ttttgtgaacgggtgaacgcttacaaaaa 28292040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 33227045 - 33226955
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccct 299  Q
    |||||||||||||||||||| | ||||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  33227045 agtgtgtgacttaaaaatgttccacattggtgagtcacaccaactagaaagtgtttatataagggtagagtgacctccaagagtgtgccct 33226955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 148 - 289
Target Start/End: Complemental strand, 9974065 - 9973915
Alignment:
Q  148 aattgttggaacactcgttgattctagtgg--aagttggata-gaaaaacacatggtaagaacta------gtgtgtgacttaaaaatgtcctacattgg 238  Q
    ||||||||||||||| ||||| |||||||   || ||||||| ||||||||||  ||||||||||      ||||||||||||||||||||| |||||||    
T  9974065 aattgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactaatgtgagtgtgtgacttaaaaatgtcccacattgg 9973966  T
Q  239 tgagccacactaactagcaagtgtttatataagggtagggtgacctccaag 289  Q
    |||||||||| |||||| || |||| |||||||||||| ||||||||||||    
T  9973965 tgagccacaccaactagaaattgttaatataagggtagagtgacctccaag 9973915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 345 - 425
Target Start/End: Complemental strand, 30925129 - 30925049
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||||||||||||| ||||||||||||| |||| | ||||||||| |||||||||||||||||||||||||||||||||||    
T  30925129 aaatagtcactttaatccctgattctgcagctcccagtcacataggtccttgactcaggattaaatacaaataagtctctg 30925049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 43457459 - 43457535
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||||||||||||||||||| |||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  43457459 aaatagtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtc 43457535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 10899204 - 10899114
Alignment:
Q  335 aaaaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||||| |||| || ||||| |||||||| |||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10899204 aaaaatgagtaaattgttactttggtccctgactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctg 10899114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 424
Target Start/End: Complemental strand, 48647564 - 48647485
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctct 424  Q
    ||||||||||||||| |||||||||| | ||||||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  48647564 aaatagtcactttagaccctgattctacagctcgctatcacataggtccctgactcaggattaaatacaaataagtctct 48647485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 35729207 - 35729131
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||||| ||||||||| ||| |||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  35729207 aaatagtcactttattccctgattttgcagctcgctgtcacataggtccttgacttaggattacatacaaataagtc 35729131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 44333141 - 44333221
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||||||||| |||||||| |||||  ||||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  44333141 aaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctg 44333221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 421
Target Start/End: Complemental strand, 44334578 - 44334494
Alignment:
Q  337 aaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||||| |||||||||||||||| ||||||||||| ||||||||| |||||| ||| ||||||| ||||||||| |||||||||    
T  44334578 aaatgagcaaatagtcactttagttcctgattctgcagctcgctgttacataggtccctgactcatgattaaatataaataagtc 44334494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 48777253 - 48777331
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataa 418  Q
    |||| ||||||||||||||||| |||||||||| |||||||||||||||  ||| ||||||| ||||||||||||||||    
T  48777253 tgagcaaatagtcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataa 48777331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 48646051 - 48646127
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||||||||||| |||||||| | |||  ||||||||||||||| ||| |||||||||||||||||||||||||||    
T  48646051 aaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 48646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 420
Target Start/End: Original strand, 45583686 - 45583761
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagt 420  Q
    |||||||||||||||||||||||||||| | ||||| |||||||| ||| |||||||| |||||||||| ||||||    
T  45583686 aaatagtcactttagtccctgattctgcagttcgctatcacataggtccctgactcagaattaaatacagataagt 45583761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 425
Target Start/End: Original strand, 7258271 - 7258357
Alignment:
Q  339 atgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||| ||||||||||||| |||||||| ||| |  |||| |||||||||| ||| | |||||||||||||||||||||||||||||    
T  7258271 atgagcaaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctg 7258357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 35727696 - 35727781
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||| ||| |||||||||  ||||||| |||||  ||||||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  35727696 tgagcaaacagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctg 35727781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 46286505 - 46286585
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||||||||||||||||||||| ||| |  |||||||| | | || ||| |||||||||||||||||||||||||||||||    
T  46286505 aaatagtcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctg 46286585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 21062814 - 21062887
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaataca 413  Q
    |||| |||| ||||||||||||||||| | |||  |||||||||| | || |||||||||||||||||||||||    
T  21062814 tgagaaaatggtcactttagtccctgactttgcacctcgctgtcataaaggtccttgactcaggattaaataca 21062887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 7259805 - 7259729
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||||| || |||||| ||  |||||||||||||| | ||  ||| |||||||||||||||||||||||    
T  7259805 aaatagtcactttaatcgctgattttgtagctcgctgtcacatgggtctctgattcaggattaaatacaaataagtc 7259729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 8374926 - 8374996
Alignment:
Q  355 tttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||||||||||| |||||  ||||||||||||||| ||  |||||||| |||||||||||| |||| ||||    
T  8374926 tttagtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctg 8374996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 34704911 - 34704991
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||||||||||||| | || |||||  |||| ||||||| ||  |  ||||||||||||||||||||| |||||||||    
T  34704911 aaatagtcactttagtctccgactctgcacctcgttgtcacaaaggcctctgactcaggattaaatacaaagaagtctctg 34704991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 44529068 - 44529108
Alignment:
Q  383 cacatagatccttgactcaggattaaatacaaataagtctc 423  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  44529068 cacatagatccctgactcatgattaaatacaaataagtctc 44529108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 425
Target Start/End: Complemental strand, 48788793 - 48788713
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||||||||||||  ||| ||| | |||  ||||||||||||||| ||| |||||||  |||||||| |||||||||||||    
T  48788793 aaatagtcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctg 48788713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 12223825 - 12223744
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||| |||| |||||||||||||||||  ||||   ||  |||||||||| ||| ||||||||||||||||| ||| |||||    
T  12223825 tgagaaaatggtcactttagtccctgacactgcacatcaatgtcacataggtccctgactcaggattaaatataaagaagtc 12223744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 421
Target Start/End: Original strand, 42477378 - 42477459
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||| ||||| ||| ||| |||| ||| |||||  |||| |||| ||||| ||  |||||||||||||||||||||||||||    
T  42477378 tgagcaaataatcaatttggtccttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagtc 42477459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 423
Target Start/End: Complemental strand, 8048911 - 8048827
Alignment:
Q  339 atgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctc 423  Q
    ||||| ||||||||||||||  | |||| |||||  ||||||| |||| || ||  ||||||| ||||||||||||| |||||||    
T  8048911 atgagcaaatagtcactttaccctctgactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctc 8048827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 7607 - 7516
Alignment:
Q  209 agtgtgtgacttaaaaa-tgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccct 299  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  7607 agtgtgtgacttaaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataagggtagtgtgacctccaagggtgtgccct 7516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 2353 - 2221
Alignment:
Q  209 agtgtgtgacttaaaaa-tgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtac 306  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||  ||||||||||||||||||||| |  |||||    
T  2353 agtgtgtgacttaaaaaatgtcccacattggtgagccacaccaactagaaagtgtttatataagggtattgtgacctccaagggtgtgcccttggggtac 2254  T
Q  307 ccacgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    |||| |||| ||| || ||| |||||| |||||    
T  2253 ccacttttgtgaacggatgaacgcttacaaaaa 2221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 2488 - 2578
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccct 299  Q
    |||||||||||||||||||||| |||||| |||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  2488 agtgtgtgacttaaaaatgtcccacattgttgagccacaccaactagaaagtatttatataagggtagagtgacctccaagggtgtgccct 2578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 10448 - 10538
Alignment:
Q  209 agtgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccct 299  Q
    |||||||||||||||||||||| |||||| |||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  10448 agtgtgtgacttaaaaatgtcccacattgttgagccacaccaactagaaagtatttatataagggtagagtgacctccaagggtgtgccct 10538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 7805797 - 7805667
Alignment:
Q  211 tgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtaccca 309  Q
    |||||||||||||||||||| |||||||| || ||| | |||||| ||||||||||||||||| || ||||||||||||||||||||| |  ||||||||    
T  7805797 tgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtaccca 7805698  T
Q  310 cgtttgcgaatgggtgagcgcttagaaaaat 340  Q
    | |||| ||| |||||| |||||| ||||||    
T  7805697 cttttgtgaacgggtgaacgcttacaaaaat 7805667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 211 - 339
Target Start/End: Complemental strand, 14374848 - 14374719
Alignment:
Q  211 tgtgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtaccca 309  Q
    |||||||||||||||||||| |||||||| || ||| | |||||| ||||||||||||||||| || ||||||||||||||||||||| |  ||||||||    
T  14374848 tgtgtgacttaaaaatgtcccacattggttagtcaccccaactagaaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtaccca 14374749  T
Q  310 cgtttgcgaatgggtgagcgcttagaaaaa 339  Q
    | |||| ||| |||||| |||||| |||||    
T  14374748 cttttgtgaacgggtgaacgcttacaaaaa 14374719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 213 - 339
Target Start/End: Original strand, 13582053 - 13582180
Alignment:
Q  213 tgtgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacccacg 311  Q
    |||||||||||||||||| |||||||| || ||| | |||||| ||||||||||||||||| || ||||||||||||||||||||| |  |||||||||     
T  13582053 tgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccact 13582152  T
Q  312 tttgcgaatgggtgagcgcttagaaaaa 339  Q
    |||| ||| |||||| |||||| |||||    
T  13582153 tttgtgaacgggtgaacgcttacaaaaa 13582180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 8074453 - 8074529
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||||||||||||||| ||| |||||||||||||||  ||| |||||||||||||||||||||||||||    
T  8074453 aaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtc 8074529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 2464671 - 2464747
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||||||||||||||| |||||||||| ||||||||||| |||| ||| ||||||| |||||||||||||||||||    
T  2464671 aaatagtcactttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtc 2464747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 339 - 421
Target Start/End: Complemental strand, 546162 - 546081
Alignment:
Q  339 atgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||| ||||||||||||||||||| |||| ||| |||||||||||||||| ||| ||||||||||||||||||| |||||||    
T  546162 atgagcaaatagtcactttagtccc-gattttgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtc 546081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 4592863 - 4592939
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||||||||||||||| ||  |||||||||||||||  ||| ||||||| |||||||||||||||||||    
T  4592863 aaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtc 4592939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 418
Target Start/End: Complemental strand, 28591245 - 28591162
Alignment:
Q  335 aaaaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataa 418  Q
    ||||| ||| |||||||||||||  ||||||| |||||  ||||||||||||||| ||| ||||||||||||||||||||||||    
T  28591245 aaaaaagagcaaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataa 28591162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 425
Target Start/End: Complemental strand, 9538170 - 9538090
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||||||||| |||||||| |||||  |||| ||||| |||| ||| ||||||||||||||||||||| |||||||||    
T  9538170 aaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctg 9538090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 18400192 - 18400268
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||| ||||||||||||||||| |||||  ||| ||||||||||| ||||||||||||||||||||| ||| |||||    
T  18400192 aaatggtcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtc 18400268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 413
Target Start/End: Complemental strand, 40612780 - 40612712
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaataca 413  Q
    |||||||||||||||||||||||| ||| |||| ||||||| ||| ||| |||||||||||||||||||    
T  40612780 aaatagtcactttagtccctgattttgcagctcactgtcacgtaggtccctgactcaggattaaataca 40612712  T

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Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 421
Target Start/End: Original strand, 21069285 - 21069367
Alignment:
Q  339 atgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||| ||||||||||||||||| |||| |||||  |||| ||||||| || ||  |||||||||||||||||||||||||||    
T  21069285 atgagcaaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtc 21069367  T

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Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 413
Target Start/End: Complemental strand, 13651249 - 13651173
Alignment:
Q  336 aaaatgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaataca 413  Q
    |||||||| |||||||||||||||||| ||| | |||  || |||||||||||| ||| |||||||||||||||||||    
T  13651249 aaaatgagcaaatagtcactttagtccttgactgtgcacct-gctgtcacataggtccctgactcaggattaaataca 13651173  T

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Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 25590428 - 25590512
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    |||| |||||||||||||  |  |||| |||||  ||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  25590428 tgagcaaatagtcactttgttttctgactctgcacctcgctgtcacataggtccctgactc-ggattaaatacaaataagtctctg 25590512  T

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Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 2466895 - 2466819
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||||||||||| ||| |||| |||||  |||||| |||||||| || |||| ||||||||||||| |||||||||    
T  2466895 aaatagtcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtc 2466819  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 9361776 - 9361858
Alignment:
Q  215 tgacttaaaaatgtcctacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagggtgtgccct 299  Q
    |||||||||||||| | ||||||| ||| || |||| |||| |||| |||||||||| | |||||||  ||||||||||||||||    
T  9361776 tgacttaaaaatgtgccacattggagagacatactacctagtaagtatttatataagtggagggtga--tccaagggtgtgccct 9361858  T

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Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 19182982 - 19183027
Alignment:
Q  375 ctcgctgtcacatagatccttgactcaggattaaatacaaataagt 420  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||||    
T  19182982 ctcgctgtcacataggtctctgactcaggattaaatacaaataagt 19183027  T

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Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 338
Target Start/End: Complemental strand, 31987430 - 31987343
Alignment:
Q  252 ctagcaagtgtttatataagggtagggtgacctccaagggtgtgccc-taaggtacccacgtttgcgaatgggtgagcgcttagaaaa 338  Q
    |||| ||||||||||||||| | |||||||||||||||| ||| ||| |  ||||||||  |||||||| | ||||||||| ||||||    
T  31987430 ctagtaagtgtttatataagcggagggtgacctccaaggatgtacccttggggtacccatttttgcgaacgagtgagcgctaagaaaa 31987343  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 410
Target Start/End: Complemental strand, 14891269 - 14891199
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaat 410  Q
    |||| ||||||||||||| |||||| | |||||  ||||||||||||||| ||  ||||||| ||||||||    
T  14891269 tgagcaaatagtcactttggtccctcactctgcacctcgctgtcacataggtctctgactcatgattaaat 14891199  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 16611760 - 16611810
Alignment:
Q  375 ctcgctgtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||||||||||| ||  ||||||||||||||||||||| ||| |||||    
T  16611760 ctcgctgtcacataggtctctgactcaggattaaatacaaagaagcctctg 16611810  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 421
Target Start/End: Complemental strand, 4594176 - 4594144
Alignment:
Q  389 gatccttgactcaggattaaatacaaataagtc 421  Q
    ||||| |||||||||||||||||||||||||||    
T  4594176 gatccctgactcaggattaaatacaaataagtc 4594144  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 9537033 - 9537101
Alignment:
Q  353 actttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||| | |||||  ||||||||||||||| ||  ||||| || |||||||||||| |||||    
T  9537033 actttagtccctcactctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagtc 9537101  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 19186305 - 19186261
Alignment:
Q  381 gtcacatagatccttgactcaggattaaatacaaataagtctctg 425  Q
    ||||||||| ||| ||||| ||||||||||||||| |||||||||    
T  19186305 gtcacataggtccctgacttaggattaaatacaaacaagtctctg 19186261  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 24900458 - 24900410
Alignment:
Q  340 tgaggaaatagtcactttagtccctgattctgctgctcgctgtcacata 388  Q
    |||| ||||||||||||| |||||||| |||||  ||||||||||||||    
T  24900458 tgagcaaatagtcactttggtccctgactctgcacctcgctgtcacata 24900410  T

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Target: scaffold0034 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 116057 - 116133
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  116057 aaatagtcactttagttcctcattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 116133  T

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Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 79075 - 79151
Alignment:
Q  345 aaatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    ||||||||| |||||| ||||| |||||  ||||||||||||||| ||||||||||| ||||||||| ||| |||||    
T  79075 aaatagtcaatttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtc 79151  T

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Target: scaffold0039; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 421
Target Start/End: Complemental strand, 74433 - 74358
Alignment:
Q  346 aatagtcactttagtccctgattctgctgctcgctgtcacatagatccttgactcaggattaaatacaaataagtc 421  Q
    |||||||| |||||||||||| |||||  ||| ||||||||||| ||| | ||||| ||||||||||||| |||||    
T  74433 aatagtcagtttagtccctgactctgcaactcactgtcacataggtccctaactcatgattaaatacaaagaagtc 74358  T

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