View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1956_high_7 (Length: 415)
Name: NF1956_high_7
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1956_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 54859276 - 54859577
Alignment:
| Q |
1 |
tcacgagacgttcgtgtccgttggtattactggccggaggagacaaagaagggtcggcgtcatttccatggctcaaaggagcttattctatctgatcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54859276 |
tcacgagacgttcgtgtccgttggtattactggccggaggagacaaagaagggtcggcgtcatttccatggctcaaaggagcttattctatctgatcatt |
54859375 |
T |
|
| Q |
101 |
ttgatgttcagagtgttgatacaatcgaaggaaaatgtactgttcacagtttgaagaactacatgaagcttgatgttgttggtgatgatgatttcttctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54859376 |
ttgatgttcagagtgttgatacaatcgaaggaaaatgtactgttcacagtttgaagaagtacatgaagcttgatgttgttggtgatgatgatttcttctg |
54859475 |
T |
|
| Q |
201 |
tcgattcaactacaattccgctactggtgctctcactcctgatatagttcaagtgtgagttcaacctttgcatatatattttcctattattacagaaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
54859476 |
tcgattcaactacaattccgctactggtgctctcactcctgatatagttcaagtgtgagttcatcctttgcatatatattttcctattattacagaaaat |
54859575 |
T |
|
| Q |
301 |
aa |
302 |
Q |
| |
|
|| |
|
|
| T |
54859576 |
aa |
54859577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 70 - 263
Target Start/End: Original strand, 54853725 - 54853918
Alignment:
| Q |
70 |
ggctcaaaggagcttattctatctgatcattttgatgttcagagtgttgatacaatcgaaggaaaatgtactgttcacagtttgaagaactacatgaagc |
169 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||||||||||||||| ||||||||| |||||||| ||| |||||| |||| |||| ||||| |||| |
|
|
| T |
54853725 |
ggctcaaaagagctttttctgtcagatcattttgatgttcagagtgctgatacaattgaaggaaagtgtgttgttcatggtttcaagagctacactaagc |
54853824 |
T |
|
| Q |
170 |
ttgatgttgttggtgatgatgatttcttctgtcgattcaactacaattccgctactggtgctctcactcctgatatagttcaagtgtgagttca |
263 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| | |||||||| |||||||||||| ||| |||||||| |||| |||||||||||| |
|
|
| T |
54853825 |
ttgatgctgttggtaatgatgatttcttctgtcgatttgagtacaattctgctactggtgctttcaatcctgatagagttgcagtgtgagttca |
54853918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 304 - 397
Target Start/End: Original strand, 54859610 - 54859703
Alignment:
| Q |
304 |
atctttatcttgattcttgcttaaatattgttcaatgttcattgctctaaaatttaatggcaggtactgtaaatgtgagatgccatataatcct |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54859610 |
atctttatcttgattcttgcttaaatattgttcaatgttcaatgctctaaaatttaatggcaggtactgtaaatgtgagatgccatataatcct |
54859703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 54854670 - 54854718
Alignment:
| Q |
339 |
tgttcattgctctaaaatttaatggcaggtactgtaaatgtgagatgcc |
387 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
54854670 |
tgttcattgctcaaaattttcatggcaggtattgtaaatgtgagatgcc |
54854718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 38474728 - 38474817
Alignment:
| Q |
95 |
atcattttgatgttcagagtgttgatacaatcgaaggaaaatgtactgttcacagtttgaagaactacatgaagcttgatgttgttggtg |
184 |
Q |
| |
|
|||||| ||||||||| |||| ||| ||||| ||||| || ||| ||| |||| |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
38474728 |
atcattatgatgttcatagtgctgacacaattgaagggaagtgttttgtgcacaatttgaagaactacatgaagcttgaagttgtaggtg |
38474817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University