View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1956_low_1 (Length: 616)
Name: NF1956_low_1
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1956_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 12 - 616
Target Start/End: Original strand, 5194689 - 5195289
Alignment:
| Q |
12 |
atcatcacattaaccagagctgctattcatttgagctctaatccaatctctattcctttcctttggtaaaagattcagccccacctacaaaatccattac |
111 |
Q |
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| T |
5194689 |
atcatcacattaaccagagctgctattcattagagctctaatccaatctctattcctttcctttggtaaaagattcagccccacctacaaaatccattac |
5194788 |
T |
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| Q |
112 |
tcagtaactgcagaataaattcaatagcccttccaaaaatttaattaataaatgaagtttcccttacaagatagaagggaagcttcatttatctagaaac |
211 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5194789 |
tcagtaactgcagaataaattcaacagcccttccaaaaatttaattaataaatgaagtttcccttacaagatagaagggaagcttcatttatctagaaac |
5194888 |
T |
|
| Q |
212 |
cattactataaa-ggatcacaagatagaactcattgtgatcctttgaatnnnnnnnntttccaaatattttgagtaatgcaaacataaaaaatcctattg |
310 |
Q |
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| T |
5194889 |
cattactataaaaggatcacaagatagaactcattgtgatcctttgaataaaaattttttccaaatattttgagtaatgcaaacataaaaaatcctattg |
5194988 |
T |
|
| Q |
311 |
tgatatctagaagctgaccattgcaaatccaatccaagttaaccttccataatctaaggagtaaggactaaagctgttcaggaaaagacagggtatagag |
410 |
Q |
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| T |
5194989 |
tgatatctagaagctgaccattgaaaatccaatccaagttaaccttccataatctaaggagtaaggactaaagctgttcaggaaaagataggg-----ag |
5195083 |
T |
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| Q |
411 |
aaagaaaagaaaccatcaaattaaattcaacttagtatttgacacatctaacaaacaacaaagaacaatgcatcttcacaattgtggcatgaaaatatat |
510 |
Q |
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| T |
5195084 |
aaagaaaagaaaccatcaaattaaattcaacttagtatttgacacatctaacaaacaacaaagaacaatgcatcttcacaattgtggcatgaaaatatat |
5195183 |
T |
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| Q |
511 |
tctttagaaggctagtggtaaaattactgataacttgtcatcaactaagaatattttatcactactttagattttaaccttgcgaagaatatacaaaaat |
610 |
Q |
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| T |
5195184 |
tctttagaaggctagtggtaaaattactgataacttgtcatcaactaagaatattttatcactactttagattttaaccttgctaagaatatacaaaaat |
5195283 |
T |
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| Q |
611 |
aatgac |
616 |
Q |
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|||||| |
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| T |
5195284 |
aatgac |
5195289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 5e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 285 - 499
Target Start/End: Complemental strand, 23100068 - 23099850
Alignment:
| Q |
285 |
taatgcaaacataaaaaatcctattgtgatatctagaagctgaccattgcaaatccaatccaagttaaccttccataatctaaggagtaag----gacta |
380 |
Q |
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| T |
23100068 |
taatgcaatcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaagttaa |
23099969 |
T |
|
| Q |
381 |
aagctgttcaggaaaagacagggtatagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacatctaacaaacaacaaagaacaatg |
480 |
Q |
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||| |||||||||| | | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23099968 |
aagttgttcaggaagaaatagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacgtctaacaaacaacaaagaacaatg |
23099869 |
T |
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| Q |
481 |
catcttcacaattgtggca |
499 |
Q |
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| T |
23099868 |
aatcttcaaaattgtggca |
23099850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 539 - 613
Target Start/End: Complemental strand, 23099849 - 23099775
Alignment:
| Q |
539 |
gataacttgtcatcaactaagaatattttatcactactttagattttaaccttgcgaagaatatacaaaaataat |
613 |
Q |
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| T |
23099849 |
gataacttgtaatcaactaagaatattttatcacttctttagattttaaccttgctaagaatataaaaaaataat |
23099775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 44714563 - 44714467
Alignment:
| Q |
12 |
atcatcacattaaccagagctgctattcatttgagctctaatccaatctctattcctttcctttggtaaaagattcagccccacctacaaaatccat |
108 |
Q |
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||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||| | |||||||| |||||||||| |
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| T |
44714563 |
atcatcacaatagccagagctactattcataagagctctaatccaatctctattcctttcctttggtgattgatccttccccacctgcaaaatccat |
44714467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 5e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 285 - 499
Target Start/End: Complemental strand, 34338996 - 34338778
Alignment:
| Q |
285 |
taatgcaaacataaaaaatcctattgtgatatctagaagctgaccattgcaaatccaatccaagttaaccttccataatctaaggagtaag----gacta |
380 |
Q |
| |
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|||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| | | |
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| T |
34338996 |
taatgcaatcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacttttcataatctaagggataatccaagttaa |
34338897 |
T |
|
| Q |
381 |
aagctgttcaggaaaagacagggtatagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacatctaacaaacaacaaagaacaatg |
480 |
Q |
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||| |||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34338896 |
aagttgttcaggaagaaacagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacgtctaacaaacaacaaagaacaatg |
34338797 |
T |
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| Q |
481 |
catcttcacaattgtggca |
499 |
Q |
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| T |
34338796 |
aatcttcaaaattgtggca |
34338778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 539 - 613
Target Start/End: Complemental strand, 34338777 - 34338703
Alignment:
| Q |
539 |
gataacttgtcatcaactaagaatattttatcactactttagattttaaccttgcgaagaatatacaaaaataat |
613 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| |
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| T |
34338777 |
gataacttgtaatcaactaagaatattttatcacttctttagattttaaccttgctaagaatataaaaaaataat |
34338703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 40175776 - 40175868
Alignment:
| Q |
415 |
aaaagaaaccatcaaattaaattcaacttagtatttgacac--atctaacaaacaacaaagaacaatgcatcttcacaattgtggcatgaaaa |
505 |
Q |
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| T |
40175776 |
aaaagaaaccatcaaattaagttaaacttagcatttgacacatatctaacaaacatcaaataatagtgaaccttcacagctgtagcatgaaaa |
40175868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 285 - 499
Target Start/End: Complemental strand, 6718707 - 6718489
Alignment:
| Q |
285 |
taatgcaaacataaaaaatcctattgtgatatctagaagctgaccattgcaaatccaatccaagttaaccttccataatctaaggagtaag----gacta |
380 |
Q |
| |
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|||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | | |
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| T |
6718707 |
taatgcaatcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaagttaa |
6718608 |
T |
|
| Q |
381 |
aagctgttcaggaaaagacagggtatagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacatctaacaaacaacaaagaacaatg |
480 |
Q |
| |
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||| |||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6718607 |
aagttgttcaggaagaaacaaagtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacgtctaacaaacaacaaagaacaatg |
6718508 |
T |
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| Q |
481 |
catcttcacaattgtggca |
499 |
Q |
| |
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||||||| |||||||||| |
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| T |
6718507 |
aatcttcaaaattgtggca |
6718489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 539 - 613
Target Start/End: Complemental strand, 6718488 - 6718414
Alignment:
| Q |
539 |
gataacttgtcatcaactaagaatattttatcactactttagattttaaccttgcgaagaatatacaaaaataat |
613 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| |
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| T |
6718488 |
gataacttgtaatcaactaagaatattttatcacttctttagattttaaccttgctaagaatataaaaaaataat |
6718414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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