View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1956_low_10 (Length: 359)
Name: NF1956_low_10
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1956_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 107 - 350
Target Start/End: Complemental strand, 42850161 - 42849917
Alignment:
| Q |
107 |
gtttgttggttagtgagattcacattgcttgaaaattagggaagaaacgttcctaggtcactgcttgttacaggaggtgagatatttgtcaagcaatgtg |
206 |
Q |
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| T |
42850161 |
gtttgttggctagtgagattcacattgcttgaaaattagggaagaaacgttcctaggtcactgcttgttacaggaggtgagatatttgtcaagcaatgtg |
42850062 |
T |
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| Q |
207 |
tatattttaacagaaactaaac-aaagttaatagcaggggaggttcttgtttttctgaaaataaaagggaggtttgtgtcattcaagcaaagctcagggg |
305 |
Q |
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| T |
42850061 |
tatattttaacagaaactaaacaaaagttaatagcaggggaggttcttgtttttctgaaaataaaagggaggtttgtgtcattcaagcaaagctcggggg |
42849962 |
T |
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| Q |
306 |
aggtctatgtaatttctcttagaaattcttatgtgacttctctgc |
350 |
Q |
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| T |
42849961 |
aggtctatgtaatttctcttagaaattcttatgtgacttctctgc |
42849917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 30941792 - 30941887
Alignment:
| Q |
133 |
gcttgaaaattagggaagaaacgttcctaggtcactgcttgttacaggaggtgagatatttgtcaagcaatgtgtatattttaacagaaactaaaca |
229 |
Q |
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| T |
30941792 |
gcttgaaaattagagaagaaatgttcctaggtcactgcttgttacgggaggtgaaatatttg-caagcaatgtttatatttcaacggaagctaaaca |
30941887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 30941715 - 30941790
Alignment:
| Q |
20 |
gttatctctttgagtgatgatgtgggttgtttagagttattcatattggattttgattaaatcttggagtttgcat |
95 |
Q |
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| T |
30941715 |
gttatctctttgactgatgacatgggttgcttggagttactcatattggattttgattaaatattggagtttgcat |
30941790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 42850208 - 42850162
Alignment:
| Q |
17 |
attgttatctctttgagtgatgatgtgggttgtttagagttattcat |
63 |
Q |
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| T |
42850208 |
attgttatctctttgagcgatgatgtgggttgtttagagttattcat |
42850162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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