View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1956_low_12 (Length: 326)

Name: NF1956_low_12
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1956_low_12
NF1956_low_12
[»] chr2 (12 HSPs)
chr2 (1-316)||(8379949-8380264)
chr2 (108-297)||(30394060-30394249)
chr2 (61-297)||(30383931-30384167)
chr2 (58-274)||(23767675-23767891)
chr2 (58-284)||(23784188-23784414)
chr2 (58-274)||(23796844-23797060)
chr2 (125-315)||(30424085-30424275)
chr2 (108-288)||(30482837-30483017)
chr2 (108-315)||(30468078-30468285)
chr2 (108-288)||(30436363-30436543)
chr2 (108-315)||(30475207-30475414)
chr2 (125-279)||(30430154-30430308)
[»] chr5 (1 HSPs)
chr5 (108-304)||(41628323-41628519)
[»] chr8 (4 HSPs)
chr8 (146-287)||(15860290-15860431)
chr8 (146-252)||(15852929-15853035)
chr8 (163-287)||(15846118-15846242)
chr8 (147-287)||(15866678-15866818)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 8379949 - 8380264
Alignment:
Q  1 aaaactagcctcttagtaaaatttttgaagtaatgatagaaattatgatatgaacattagtcttacctccataaagggattaaagatttcactagatttt 100  Q
    ||||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8379949 aaaactagcctctttttaaaaatcttgaagtaatgatagaaattatgatatgaacattagtcttacctccataaagggattaaagatttcactagatttt 8380048  T
Q  101 tcataacaagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8380049 tcataacaagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaa 8380148  T
Q  201 attctgtagggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaacttgtgaggaaactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| ||||||||||||||||||||    
T  8380149 attctgtagggaaggccatatgtctatttcacctgatccatctgatgacaacgttgactcccatttgctaatcatatcaatgcaacttgtgaggaaactt 8380248  T
Q  301 ggtgccatgatctgtg 316  Q
    ||||||||||||||||    
T  8380249 ggtgccatgatctgtg 8380264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 108 - 297
Target Start/End: Complemental strand, 30394249 - 30394060
Alignment:
Q  108 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 207  Q
    ||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||  ||||||||||| ||||||||| |||||||||     
T  30394249 aagttcagcttgctctctttgaagttgaaatattctttttccttcttcataactacttccaaacgcagttcgagaaatagcatcacttgccaaattctgc 30394150  T
Q  208 agggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaacttgtgaggaaa 297  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||  || ||||||||||||||||||||||| |||||||||||| ||||    
T  30394149 agggaaggccatacgtctatttcacatgatccatctgaagacaacatttcctcccatttgctaatcatatcattgcaacttgtgaagaaa 30394060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 61 - 297
Target Start/End: Complemental strand, 30384167 - 30383931
Alignment:
Q  61 tcttacctccataaagggattaaagatttcactagatttttcataacaagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaac 160  Q
    |||||| ||||||||||||| | |||||||  || |  |||||  | ||||||| |||||||||||||||| | ||||||||||||||||||||| || |    
T  30384167 tcttacatccataaagggatgatagatttcgttacaactttcactataagttcagcttgctctctttgaagttgaaatattctttttccttcttcatagc 30384068  T
Q  161 tacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctc 260  Q
    |||||||||||||| ||||||||||| ||||||||| |||||| || |||||||||||||| |||||||||| ||||||||||||||||||  ||  |||    
T  30384067 tacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctc 30383968  T
Q  261 ccatttgctaatcatatcagtgcaacttgtgaggaaa 297  Q
    ||||||| |||||| |||| |||||||||||| ||||    
T  30383967 ccatttgttaatcaaatcattgcaacttgtgaagaaa 30383931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 58 - 274
Target Start/End: Complemental strand, 23767891 - 23767675
Alignment:
Q  58 tagtcttacctccataaagggattaaagatttcactagatttttcataacaagttcaccttgctctctttgaagatcaaatattctttttccttcttcgt 157  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||| | ||||| | || |||||||||| |    
T  23767891 tagtcttacctccataaagggattaaagatttcattagatttttcattataagttcaccttgctctatttgaagttgaaatacttttcttccttcttcat 23767792  T
Q  158 aactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgaagacaatgttgc 257  Q
    |||||||||||||||     ||||  |||||||||||||||||  |||| ||||||||||||||||||||||||   ||||||| ||||||||| ||| |    
T  23767791 aactacttccaaatgacgaacgagcgataacatcacttgtcaagctctgaagggaaggccatatgtctatttcagaggatccatttgaagacaacgtttc 23767692  T
Q  258 ctcccatttgctaatca 274  Q
     ||||| ||||||||||    
T  23767691 ttcccaattgctaatca 23767675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 58 - 284
Target Start/End: Original strand, 23784188 - 23784414
Alignment:
Q  58 tagtcttacctccataaagggattaaagatttcactagatttttcataacaagttcaccttgctctctttgaagatcaaatattctttttccttcttcgt 157  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||| | ||||| | || |||||||||| |    
T  23784188 tagtcttacctccataaagggattaaagatttcattagatttttcattataagttcaccttgctctatttgaagttgaaatacttttcttccttcttcat 23784287  T
Q  158 aactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgaagacaatgttgc 257  Q
    |||||||||||||||     ||||  |||||||||||||||||  |||| ||||||||||||| ||| ||||||| |||||||| |||||||||  ||      
T  23784288 aactacttccaaatgacgaacgagcgataacatcacttgtcaagctctgaagggaaggccatacgtccatttcacatgatccatttgaagacaacatttt 23784387  T
Q  258 ctcccatttgctaatcatatcagtgca 284  Q
     ||||| |||||||||| |||| ||||    
T  23784388 ttcccaattgctaatcaaatcattgca 23784414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 274
Target Start/End: Complemental strand, 23797060 - 23796844
Alignment:
Q  58 tagtcttacctccataaagggattaaagatttcactagatttttcataacaagttcaccttgctctctttgaagatcaaatattctttttccttcttcgt 157  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||| | ||||| | || |||||||||| |    
T  23797060 tagtcttacctccataaagggattaaagatttcattagatttttcattataagttcaccttgctctatttgaagttgaaatacttttcttccttcttcat 23796961  T
Q  158 aactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgaagacaatgttgc 257  Q
    |||||||||||||||     ||||  |||||||||||||||||  |||| ||||||||||||||||||||||||   | ||||  ||||||||| ||| |    
T  23796960 aactacttccaaatgacgaacgagcgataacatcacttgtcaagctctgaagggaaggccatatgtctatttcagaggctccacttgaagacaacgtttc 23796861  T
Q  258 ctcccatttgctaatca 274  Q
     ||||| ||||||||||    
T  23796860 ttcccaattgctaatca 23796844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 125 - 315
Target Start/End: Complemental strand, 30424275 - 30424085
Alignment:
Q  125 tttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtc 224  Q
    ||||||| | ||||||||||||||| ||||| |||||||||||||||||   |||||||||||||||||| | |||||| || ||| ||||||||| |||    
T  30424275 tttgaagttgaaatattctttttccctcttcataactacttccaaatgcagctcgagaaataacatcactcgccaaattttgaaggaaaggccatacgtc 30424176  T
Q  225 tatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaacttgtgaggaaacttggtgccatgatctgt 315  Q
     ||||||| |||||||||||||| |||  ||  ||||||||||||||||| ||||  ||||||| ||||| |  |||||  ||||||||||    
T  30424175 catttcacatgatccatctgaagccaacattttctcccatttgctaatcagatcatcgcaacttttgaggtatattggtaacatgatctgt 30424085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 288
Target Start/End: Complemental strand, 30483017 - 30482837
Alignment:
Q  108 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 207  Q
    ||||||| |||||||  ||||||| | ||||||| || |||||||||| |||||||||||||||||  |||||| |||||||||||| | |||||| ||     
T  30483017 aagttcagcttgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttga 30482918  T
Q  208 agggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaactt 288  Q
    | |||||||||||  || ||||||| |||||||||| | || ||  || ||||||||||||||||||||||| ||||||||    
T  30482917 atggaaggccatacatcaatttcacatgatccatctaatgataacattccctcccatttgctaatcatatcattgcaactt 30482837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 315
Target Start/End: Complemental strand, 30468285 - 30468078
Alignment:
Q  108 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 207  Q
    ||||||| |||| ||  ||||||| | ||||||||||||||| ||||| |||||||||||||| ||   |||||||||||||||||| |  ||||| ||     
T  30468285 aagttcagcttgttcggtttgaagttgaaatattctttttccctcttcataactacttccaaacgctgctcgagaaataacatcactggcaaaattttga 30468186  T
Q  208 agggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaacttgtgaggaaacttggtgcca 307  Q
    ||| ||||||||| ||| ||||||| |||||||||||| |||||  ||  ||||||||||||||||| ||||  ||||||| || ||||  |||||  ||    
T  30468185 aggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcagatcatcgcaacttttgtggaatattggtaaca 30468086  T
Q  308 tgatctgt 315  Q
    ||||||||    
T  30468085 tgatctgt 30468078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 288
Target Start/End: Complemental strand, 30436543 - 30436363
Alignment:
Q  108 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 207  Q
    ||||||| |||| ||  ||||||| | ||||||||||||||| ||||| |||||||||||||| ||   ||||||||||| |||||| | |||||| ||     
T  30436543 aagttcagcttgttcggtttgaagttgaaatattctttttccctcttcataactacttccaaacgctgctcgagaaataagatcactggccaaattttga 30436444  T
Q  208 agggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaactt 288  Q
    ||| ||||||||| ||| ||||||| |||||||||||| |||||  ||  ||||||||||||||||| ||||  |||||||    
T  30436443 aggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcaaatcatcgcaactt 30436363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 315
Target Start/End: Complemental strand, 30475414 - 30475207
Alignment:
Q  108 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 207  Q
    ||||||| |||||||  ||||||| | ||||||||||||||| ||||| |||||||||||||||||  ||| ||||||||||||||| | |||||| ||     
T  30475414 aagttcagcttgctcgatttgaagttgaaatattctttttccctcttcataactacttccaaatgctgttctagaaataacatcactcgccaaattttga 30475315  T
Q  208 agggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaacttgtgaggaaacttggtgcca 307  Q
    ||| ||||||| |  || | ||||| |||||||||||| |||||  ||  |||||||||| |||||| ||||   |||||| ||| |||| |||||  ||    
T  30475314 aggaaaggccaaacatccaattcacatgatccatctgatgacaacattctctcccatttggtaatcaaatcatcacaacttttgaagaaaattggtaaca 30475215  T
Q  308 tgatctgt 315  Q
    ||||||||    
T  30475214 tgatctgt 30475207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 279
Target Start/End: Complemental strand, 30430308 - 30430154
Alignment:
Q  125 tttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtc 224  Q
    ||||||| | ||||||||||||||| ||||| |||||||||||||||||   ||||||||||||||| ||||  ||||| || ||| |||||||||  ||    
T  30430308 tttgaagttgaaatattctttttccctcttcataactacttccaaatgcagctcgagaaataacatctcttgctaaattttgaaggaaaggccatacttc 30430209  T
Q  225 tatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatca 279  Q
     ||||||| |||||||||||||| |||  ||  ||||||||||||||||| ||||    
T  30430208 catttcacatgatccatctgaagccaacattttctcccatttgctaatcagatca 30430154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 108 - 304
Target Start/End: Original strand, 41628323 - 41628519
Alignment:
Q  108 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 207  Q
    ||||||| |||||||  ||||||| | |||||||||| |||||||||| ||||||||||| ||||   ||||||||||||||||||| | |||||||||     
T  41628323 aagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctga 41628422  T
Q  208 agggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaacttgtgaggaaacttggtg 304  Q
    |||||||||||||| |||||||||| ||||||||||| ||||||  || |||||||||| ||||| | |||  |||||||||||| |||| ||||||    
T  41628423 agggaaggccatatatctatttcacatgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttgtgaagaaagttggtg 41628519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 287
Target Start/End: Original strand, 15860290 - 15860431
Alignment:
Q  146 ttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctga 245  Q
    |||||||| |||| || |||||||||||  | |||||||| |||||||  || |||||||| ||||||||||| |  || || |||| || |||||||||    
T  15860290 ttccttctgcgtagctgcttccaaatgctgtccgagaaattacatcacaggtaaaattctgaagggaaggccaaacatcaatctcacatgttccatctga 15860389  T
Q  246 agacaatgttgcctcccatttgctaatcatatcagtgcaact 287  Q
     ||||||  | ||| ||||||||| ||||| ||| |||||||    
T  15860390 tgacaataatcccttccatttgcttatcatttcattgcaact 15860431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 252
Target Start/End: Original strand, 15852929 - 15853035
Alignment:
Q  146 ttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctga 245  Q
    |||||||| |||| || |||||||||||  | |||||||| |||||||  ||||||||||| ||| ||||||| |  || || |||| || |||||||||    
T  15852929 ttccttctgcgtagctgcttccaaatgctgtccgagaaattacatcacacgtcaaattctgaaggaaaggccaaacatcaatctcacatgttccatctga 15853028  T
Q  246 agacaat 252  Q
     ||||||    
T  15853029 tgacaat 15853035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 287
Target Start/End: Original strand, 15846118 - 15846242
Alignment:
Q  163 cttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctccc 262  Q
    |||||||||||  ||| |||||| |||||||  ||||||||||| ||| ||||||| |  || |  |||| || ||||||||| ||||||  | ||| ||    
T  15846118 cttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaagctcacatgttccatctgatgacaataatcccttcc 15846217  T
Q  263 atttgctaatcatatcagtgcaact 287  Q
    ||||||| ||||| ||| |||||||    
T  15846218 atttgcttatcatttcattgcaact 15846242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 287
Target Start/End: Original strand, 15866678 - 15866818
Alignment:
Q  147 tccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgaa 246  Q
    ||||||| |||| || |||||||||||  | |||||||| |||||||  || |||||||| ||| ||||||| |  || |  |||| || |||||||||     
T  15866678 tccttctgcgtagctgcttccaaatgccgtccgagaaattacatcacaggtaaaattctgaaggaaaggccaaacatcaacctcacatgttccatctgat 15866777  T
Q  247 gacaatgttgcctcccatttgctaatcatatcagtgcaact 287  Q
    ||||||  | ||| |||||| |||||||| ||| |||||||    
T  15866778 gacaatagttccttccatttactaatcatttcattgcaact 15866818  T

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