View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1956_low_13 (Length: 305)
Name: NF1956_low_13
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1956_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 3017538 - 3017803
Alignment:
| Q |
16 |
atagaaagactaaagaactaaacgagtaagctaaataatagatggcttaacatgaacaaaagaacacaacaatggagctgcaaactccggcacggtggct |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3017538 |
atagaaagactaaagaactaaacgagtaagctaaataatagatggcttaacatgaacaaaa---cacaacaatggagctgcaaactccggcacggtggct |
3017634 |
T |
|
| Q |
116 |
atgtatgattgcatggcggcggggaaatgggtcacgnnnnnnnttgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatgaaga |
215 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017635 |
atgtatgattgcacggcggcggggaaatgggtcacgaaaaaaattgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatgaaga |
3017734 |
T |
|
| Q |
216 |
aaacgatcttattttgtttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggtta |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017735 |
aaacgatcttattttgtttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggtta |
3017803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 46420602 - 46420333
Alignment:
| Q |
16 |
atagaaagactaaagaactaaacgagtaagctaaataatagatggcttaacatgaacaaa-agaacacaacaatggagctgcaaactccggcacggtggc |
114 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
46420602 |
atagaaaaactaaagaactaaacgagtaagctaaataattgatggcttaacatgaacaaagagaacacaacaatggagctgcaaactccggcgcggtggc |
46420503 |
T |
|
| Q |
115 |
tatgtatgattgcatggcggcggggaaatgggtcacgnnnnnnnttgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatgaag |
214 |
Q |
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||||||||||| || |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46420502 |
tatgtatgattacacggcggcggggaaatgggtcacgaaaaaaattgtcctttggtgaaactaaagggaccaatagaaagctcttgttgaggggatgaag |
46420403 |
T |
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| Q |
215 |
aaaacgatcttattttgtttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggtta |
284 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46420402 |
aaaacgatcttattttctttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggtta |
46420333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 34343810 - 34344079
Alignment:
| Q |
16 |
atagaaagactaaagaactaaacgagtaagctaaataatagatggcttaacatgaacaaa-agaacacaacaatggagctgcaaactccggcacggtggc |
114 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||| | |
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| T |
34343810 |
atagaaaaactaaagaactaaatgagtaagctaaataatagatggcttaacatgaacaaagagaacacaatgatggagctgcaaactctggcgcggtgac |
34343909 |
T |
|
| Q |
115 |
tatgtatgattgcatggcggcgggg-aaatgggtcacgnnnnnnnttgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatgaa |
213 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34343910 |
tatgtatgattgcacagcggcgggggaaatgggtcacgaaaaaaattgtcctttggtgaaactaaagggaccaatagaaagctattgttgaggggatgaa |
34344009 |
T |
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| Q |
214 |
gaaaacgatcttattttgtttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggtt |
283 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34344010 |
gaaaacgatcttattttgtttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggtt |
34344079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 37279076 - 37278806
Alignment:
| Q |
17 |
tagaaagactaaagaactaaacgagtaagctaaataatagatggcttaacatgaacaaa-agaacacaacaatggagctgcaaactccggcacggtggct |
115 |
Q |
| |
|
|||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |
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| T |
37279076 |
tagaaaaattaaagaattaaatgagtaagctaaataatagatggcttaacatgaacaaagagaacacaacaatggagctgcaaactccggagccgtggct |
37278977 |
T |
|
| Q |
116 |
atgtatgattgcatggcggcgggg--aaatgggtcacgnnnnnnnttgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatgaa |
213 |
Q |
| |
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||||||||||||| || |||||| |||||||||||| | || | | |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37278976 |
atgtatgattgcaccgcagcgggggaaaatgggtcacgcaaaaaaatttcatgtggtgaaactaaagggaccaatagaaagctctcgttgaggggatgaa |
37278877 |
T |
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| Q |
214 |
gaaaacgatcttattttgtttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggtta |
284 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |
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| T |
37278876 |
gaaaacgatcttactttgtttgatcagtgaaaatggggctcaaatttgcaccaaaaatggtggttcggtta |
37278806 |
T |
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