View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1956_low_14 (Length: 298)
Name: NF1956_low_14
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1956_low_14 |
 | |
|
| [»] chr3 (19 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0201 (1 HSPs) |
| | |
|
| [»] scaffold0570 (2 HSPs) |
| | |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 36025646 - 36025366
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagcaagaaagttataacatttatagatgacaatgagcttgaaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36025646 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatctttatgaagctctgagcaagaaagttataacatttatagatgacaatgagcttgaaaaa |
36025547 |
T |
|
| Q |
118 |
ggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgcttga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36025546 |
ggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgcttga |
36025447 |
T |
|
| Q |
218 |
atgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcac |
298 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36025446 |
atgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcac |
36025366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 36004885 - 36004605
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagcaagaaagttataacatttatagatgacaatgagcttgaaaaa |
117 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
36004885 |
cttttgtggtgaggatactggtagaaagttcacaagccatctttatgaagctctgagcaagaaaattataacatttatagatgacaatgagcttgaaaaa |
36004786 |
T |
|
| Q |
118 |
ggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgcttga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36004785 |
ggagacgagatctcgtcagcactgatcaaagctattgaagattcgtctgcatctatcgtcatcttctcaaaagactacgcttcctcaaaatggtgcttga |
36004686 |
T |
|
| Q |
218 |
atgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcac |
298 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||| | ||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
36004685 |
atgaactcgtcaagattctagaatgtaagaaagatcagggacagattgtgataccgattttctacgaaatagatccatcac |
36004605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 36017552 - 36017268
Alignment:
| Q |
17 |
actttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagcaagaaag---ttataacatttatagatgacaatgagcttga |
113 |
Q |
| |
|
||||| ||||||||||||||||||| || |||||||||||| || |||||||||||| | || | ||| |||||| ||||||||| |||||||| |
|
|
| T |
36017552 |
acttttgtggtgaggatactcgtagcaaattcacaagccatcttaatgaagctctgaaaaggagtggcgttaggacatttgtagatgacagcgagcttga |
36017453 |
T |
|
| Q |
114 |
aaaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgc |
213 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||| |||| ||||||||| ||||| ||||| |||||||||||||| || ||||| ||| |
|
|
| T |
36017452 |
aaaaggagacgagatctcatcagcactgatcaaagccattgaggagtcagatgcatctatagtcatattctcgaaagactatgcttcttctaaatgatgc |
36017353 |
T |
|
| Q |
214 |
ttgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcac |
298 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| | ||||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
36017352 |
ttgaatgaactcgtcaagattctagaatgcaagaaagatcagggacaaattgtgataccgattttctacgaaatagatccatcac |
36017268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 23480942 - 23480659
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||| ||||||| ||||||||| ||||||||| ||| |||||||| ||||| ||||| || |
|
|
| T |
23480942 |
ctttcgaggtgaggatactcgcagaaacttcaccagccatctttatgatgctctgagccgaaagaaagttgaaacctttatagacaacaataagcttcaa |
23480843 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||| ||||||||||| ||||||||| |||||||||||| || |||||||||| ||||||||||||| |
|
|
| T |
23480842 |
aaaggagatgagatctcgccagcactcatcaaagccattgagaagtcacatgcatctattgtcatcttctcagaaaactatgcttcttcaaaatggtgct |
23480743 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcac |
298 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||| |||| | ||| ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
23480742 |
tgaatgagctcaagaagattcttgaatgcaagaaatataaggaacacattgtgataccagttttttacaaaatagatccatcac |
23480659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 23406931 - 23406649
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||| ||||||| ||||||||| |||||| ||| || |||||||| ||||||||||| || |
|
|
| T |
23406931 |
ctttcgaggtgaggatactcgcagaaacttcactagccatctttatgacgctctgagccgaaagaaaattaaaatctttatagacaacaatgagcttcaa |
23406832 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||| |||||| |||| ||||||||| |||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
23406831 |
aaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgct |
23406732 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatca |
297 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||| ||| | ||||||||||||||||||||| || | |||||||||||| |
|
|
| T |
23406731 |
tgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgatacctgttttttacaacatagatccatca |
23406649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 23465585 - 23465302
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||| |||| || ||||||||| ||||||||| ||| |||||||| ||||||||||| || |
|
|
| T |
23465585 |
ctttcgaggtgaggatactcgcagaaacttcactagccatctttacgacgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaa |
23465486 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||| |||||| |||| ||||||||| |||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
23465485 |
aaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgct |
23465386 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcac |
298 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||| ||| | ||||||||||||||| ||||| || | ||||||||||||| |
|
|
| T |
23465385 |
tgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcac |
23465302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 23449452 - 23449169
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||| ||||||| ||| ||||| ||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
23449452 |
ctttcgaggtgaggatactcgcagaaacttcactagccatctttatgatgctttgagccgaaagaaagttgaaacatttatagacaacaatgagcttcga |
23449353 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||| |||||| |||| ||||||||| |||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
23449352 |
aaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgct |
23449253 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcac |
298 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||| ||| ||||||||||||||| ||||| || | ||||||||||||| |
|
|
| T |
23449252 |
tgaatgagctcaaaaagattcttgaatgcaagaaatatatgcaacagattgtgataccagttttttacaacatagatccatcac |
23449169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 36009932 - 36009671
Alignment:
| Q |
19 |
tttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagcaagaaagttataacatttatagatgacaatgagcttgaaaaag |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| | || || |||||||||||||| ||||||| |||||| || ||| ||| |||||||||| |
|
|
| T |
36009932 |
tttcgtggtgagggcactcgtagaaacttcacaggccatctctacgatgctctgagcaagaaggttataatatttatggacgacggtgatcttgaaaaag |
36009833 |
T |
|
| Q |
119 |
gagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgcttgaa |
218 |
Q |
| |
|
|||| ||||| || ||| |||| |||||||| |||||| |||| | ||||||| |||||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
36009832 |
gagatgagatatcatcatcactaatcaaagccattgaggagtcatacacatctatagtcatcttttcaaaagattatgcttcttcaaaatggtgcttgaa |
36009733 |
T |
|
| Q |
219 |
tgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttct |
280 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
36009732 |
tgaactcgtcaaaattctagaatgcaaaaaagatttgggacaaattgtgatacctgttttct |
36009671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 36034462 - 36034174
Alignment:
| Q |
17 |
actttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagcaagaaag---ttataacatttatagatgacaatgagcttga |
113 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||||||||| || || |||||||| |||| | || ||||||||||| |||| |||||||| |
|
|
| T |
36034462 |
actttcatggtgaggatactcgtagcaaattcacaagccatcttaataaagctctgcaaaagagcggcctttggacatttatagacgacagcgagcttga |
36034363 |
T |
|
| Q |
114 |
aaaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatct----atcgtcatcttctcaaaagactatgcttcctcaaaatg |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||| |||| ||||||| || |||| |||||||||||||||||||| |||||||| |
|
|
| T |
36034362 |
aaaaggagacgagatctcatcagcactgatcaaagccattgaggagtcagatgcatctctatatattcatattctcaaaagactatgcttcttcaaaatg |
36034263 |
T |
|
| Q |
210 |
gtgcttgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcac |
298 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
36034262 |
gtatttgaatgaactcgtcaagattctagaatgcaagaaagatcatgggcagattgtgataccgattttctacgaaatagatccatcac |
36034174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 23501215 - 23500932
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||| |||| || ||||||||| ||||||||| ||| |||||||| ||||||||||| || |
|
|
| T |
23501215 |
ctttcgaggtgaggatactcgcagaaacttcactagccatctttacgacgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaa |
23501116 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||| |||||| |||| ||||||||| |||||||||||| || |||||||||| ||||||||||||| |
|
|
| T |
23501115 |
aaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcgtcaaaatggtgct |
23501016 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatgga-cagattgtgatacctgttttctatgaaatagatccatcac |
298 |
Q |
| |
|
||||||| ||| |||||||| ||||| |||||| ||| |||| |||||||||||||| ||||| || | ||||||||||||| |
|
|
| T |
23501015 |
tgaatgagctcaaaaagattcttgaatgtaagaaatata-tggagcagattgtgataccagttttttacaacatagatccatcac |
23500932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 23474594 - 23474311
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||| ||||| ||||||| ||||||||| ||||||||| ||| |||||||| ||||||||||| || |
|
|
| T |
23474594 |
ctttcgaggtgaggatacccgcagaaacttcacatgccatctttatgatgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaa |
23474495 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| |||| ||| ||||||| |||| ||| |||||| |||| || ||||| |||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
23474494 |
aaaggagataagatatcgccagcactcatcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaaactatgcttcctcaaaatggtgct |
23474395 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcac |
298 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||| ||| | ||||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
23474394 |
tgaatgagctcaaaaagattcttgaatgcaagaaatatatggtacagattgtgatacctgttttttacaacatagatccatcac |
23474311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 28 - 298
Target Start/End: Complemental strand, 23354072 - 23353799
Alignment:
| Q |
28 |
gaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaaaaaggagacg |
124 |
Q |
| |
|
|||||||| || ||||||||||| |||||| ||||||| ||||| ||| |||| |||| ||| |||||||| ||||||||||| |||||||||| | |
|
|
| T |
23354072 |
gaggatacccgcagaaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatg |
23353973 |
T |
|
| Q |
125 |
agatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgcttgaatgaact |
224 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||| |||| ||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| || |
|
|
| T |
23353972 |
agatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagct |
23353873 |
T |
|
| Q |
225 |
cctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcac |
298 |
Q |
| |
|
| |||||||| |||||||||||| ||| ||||||||||||||| ||||| || | ||||||||||||| |
|
|
| T |
23353872 |
caaaaagattcttgaatgcaagaaatatatgtaacagattgtgataccagttttttacaacatagatccatcac |
23353799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 23435650 - 23435419
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||| ||||| ||||||| ||||||||| ||||||||| ||| |||||||| ||||||||||| || |
|
|
| T |
23435650 |
ctttcgaggtgaggatacccgcagaaacttcacatgccatctttatgatgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaa |
23435551 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||| |||||| |||| ||||||||| |||||||||||| || |||||||||| ||||||||||||| |
|
|
| T |
23435550 |
aaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcttcaaaatggtgct |
23435451 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaag |
246 |
Q |
| |
|
| ||||| ||| |||||||||||||||||| |
|
|
| T |
23435450 |
taaatgagctcaaaaagattctagaatgcaag |
23435419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 23442062 - 23441779
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||| ||||| ||||||| |||| |||| ||||||||| ||| |||||||| ||||||||||| || |
|
|
| T |
23442062 |
ctttcgaggtgaggatacccgcagaaacttcacatgccatctttatgatgctcggagccgaaagaaagttgaaacctttatagacaacaatgagcttcaa |
23441963 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| |||| ||| ||||||| |||| ||| |||||| |||| || ||||| |||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
23441962 |
aaaggagataagatatcgccagcactcatcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaaactatgcttcctcaaaatggtgct |
23441863 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcac |
298 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||| ||| | ||||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
23441862 |
tgaatgagctcaaaaagattcttgaatgcaagaaatatatggtacagattgtgatacctgttttttacaacatagatccatcac |
23441779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 23388571 - 23388308
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||| |||||| ||||||| |||||||| || |||||| ||| |||||||| |||||||||||||| |
|
|
| T |
23388571 |
ctttcgaggtgatgatactcgcagaaacttcacgagccatctttatgatactctgagccgaaaaaaagttgaaacctttatagacaacaatgagcttgaa |
23388472 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||| |||||| |||| | || || ||||||||||| || | |||||||||||||||||||||| |
|
|
| T |
23388471 |
aaaggagatgagatctcaccagcactcatcaaagccattgaggagtcacacgtgtcaattatcatcttctcagaaaattatgcttcctcaaaatggtgct |
23388372 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgtttt |
278 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
23388371 |
tgaatgagctcaagaagattcttcaatgcaagaaatatatgcaacagattgtgatacctgtttt |
23388308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 21087569 - 21087310
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||| |||||||||||||| | |||| ||||||||||| ||||||| ||||||||| || || ||| ||| |||||||| ||||| ||||| || |
|
|
| T |
21087569 |
ctttcgaggtgaggatactcgcaaaaacatcacaagccatctttatgatgctctgagccaaaataatgttcaaacctttatagacaacaataagcttaaa |
21087470 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| ||||| | ||| ||| |||||||| ||||| |||| |||||| || | |||||||||| || |||| ||||||||||||||||||| |
|
|
| T |
21087469 |
aaaggagataagatcacaccagaactcatcaaagccattgaagagtcacatgcatcgattgacatcttctcagaaaactacgcttcctcaaaatggtgct |
21087370 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctg |
274 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| |||| | ||| ||||||||||||| |
|
|
| T |
21087369 |
tgaatgagctcaaaaagattctagaatgcaagaaatataaggaacaaattgtgatacctg |
21087310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 295
Target Start/End: Complemental strand, 21088666 - 21088477
Alignment:
| Q |
106 |
gagcttgaaaaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaa |
205 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| | ||| ||||||||||| |||| || |||||| || ||||| ||| || ||||||||||||||| |
|
|
| T |
21088666 |
gagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcacgtgtatctattgttatcttttcagaaaactatgcttcctcaa |
21088567 |
T |
|
| Q |
206 |
aatggtgcttgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccat |
295 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||||||||||| || | ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
21088566 |
aatggtgcttgaatgagctcaaaaagattcaagaatgcaagaaatttatggaacagattgtgatacctgttttttacaaaatagatccat |
21088477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 23456216 - 23455953
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| ||||||| ||| |||| ||||||||| ||| || ||||| ||||||| ||| || |
|
|
| T |
23456216 |
ctttcgaggtgaggatactcgcagaaacttcacaagccatctttatgatgctttgagtcgaaagaaagttgaaaccttcatagacaacaatgaccttcaa |
23456117 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| |||||||| || |||| |||||| | |||||| |||| || ||||| |||||||||||| || |||| ||||||||||||||||| | |
|
|
| T |
23456116 |
aaaggagatgagatctcaccaacactcatcaaaaccattgaggagtcacatgtgtctattgtcatcttctcagaaaactacgcttcctcaaaatggtgtt |
23456017 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgtttt |
278 |
Q |
| |
|
||||||| ||| |||||||||||||||||| || ||| | |||||| ||||||||| |||| |
|
|
| T |
23456016 |
tgaatgatctcaaaaagattctagaatgcaagcaatatatggaacagatcgtgatacctatttt |
23455953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 35766334 - 35766394
Alignment:
| Q |
238 |
gaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcac |
298 |
Q |
| |
|
||||| ||||||||| ||||| |||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
35766334 |
gaatgtaagaaagatcggggacaaattgtgatacctgtgttctataaaatagatccatcac |
35766394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 12894547 - 12894827
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagcaagaaagttataacatttatagatgacaatgagcttgaaaaa |
117 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| ||| ||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
12894547 |
ctttcgcggtgaggatactcgtagaagcttcacaagtcatctttatgatgctttgagcaagaaagttataacctttatagatgacaatgagcttcaaaaa |
12894646 |
T |
|
| Q |
118 |
ggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgcttga |
217 |
Q |
| |
|
||||| ||||| || |||||| |||||||||| |||||| |||| | ||||||||| ||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
12894647 |
ggagatgagatatcctcagcattgatcaaagccattgaggagtcatatgcatctattgtcatcttctcaatagactatgcttcctcaaaatggtgtttga |
12894746 |
T |
|
| Q |
218 |
atgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcac |
298 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
12894747 |
atgaactcgtcaagattctagaatgcaagaaagatcatggacaaattgtgatacctgttttttacgaaatagatccatcac |
12894827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 31159984 - 31159947
Alignment:
| Q |
179 |
tcttctcaaaagactatgcttcctcaaaatggtgcttg |
216 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
31159984 |
tcttctcaaaaaactatgcttcctcaacatggtgcttg |
31159947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 16334586 - 16334867
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagcaagaaag---ttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||| || |||||||| ||| |||| | ||| ||||||||||||||||| |||||| || |
|
|
| T |
16334586 |
ctttcgtggtgatgatactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaa |
16334685 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| |||| | ||||||||| |||||||| ||| || |||||||||| ||||||||||| | |
|
|
| T |
16334686 |
aaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtgtt |
16334785 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatc |
296 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
16334786 |
tgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatc |
16334867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 16125065 - 16124784
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagcaagaaag---ttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||| || |||||||| ||| |||| | ||| ||||||||||| |||| |||||| || |
|
|
| T |
16125065 |
ctttcgtggtgatgatactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaa |
16124966 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| |||| | ||||||||| |||||||| ||| ||||||||||||| ||||||||||| | |
|
|
| T |
16124965 |
aaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtt |
16124866 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatc |
296 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
16124865 |
tgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatc |
16124784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 16127218 - 16126937
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagcaagaaag---ttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||| || |||||||| ||| |||| | ||| ||||||||||| |||| |||||| || |
|
|
| T |
16127218 |
ctttcgtggtgatgatactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaa |
16127119 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| |||| | ||||||||| |||||||| ||| ||||||||||||| ||||||||||| | |
|
|
| T |
16127118 |
aaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtt |
16127019 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatc |
296 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
16127018 |
tgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatc |
16126937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 13759 - 13496
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||| ||||||| ||||||| ||||||| | |||||| || ||| ||||| || ||||||||||| || |
|
|
| T |
13759 |
ctttcgaggtgaggatattcgcagaaacttcagaagccatctttatgatgctctgatccgaaagaaaattgaaacctttatggacaacaatgagcttcaa |
13660 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||| |||||| |||| ||||||||| |||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
13659 |
aaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgct |
13560 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgtttt |
278 |
Q |
| |
|
| ||||| ||| |||||||| |||||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
13559 |
taaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgatacctgtttt |
13496 |
T |
|
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Target: scaffold0570 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 9581 - 9844
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatgaagctctgagc---aagaaagttataacatttatagatgacaatgagcttgaa |
114 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||||| ||||||| ||||||||| |||||| || ||| ||||| || ||||||||||| || |
|
|
| T |
9581 |
ctttcgaggtgaggatactcgcagaaacttaacaagccatctttatgatgctctgagccgaaagaaaattgaaacctttatggacaacaatgagcttcaa |
9680 |
T |
|
| Q |
115 |
aaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgct |
214 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||| |||||| |||| ||||||||| || ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
9681 |
aaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtaatcttctcagaaaactatgcttcctcaaaatggtgct |
9780 |
T |
|
| Q |
215 |
tgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgtttt |
278 |
Q |
| |
|
| ||||| ||| |||||||| ||||||||| || ||| | |||||| |||||||||||||| |
|
|
| T |
9781 |
taaatgagctcaaaaagattcttgaatgcaagcaatatatggaacagatggtgatacctgtttt |
9844 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 296
Target Start/End: Original strand, 3309 - 3427
Alignment:
| Q |
178 |
atcttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttt |
277 |
Q |
| |
|
||||||||| || ||||||||||||||||||| ||||||||||| ||| |||||| |||||||| ||||| ||| | ||||||||| || |||||| |
|
|
| T |
3309 |
atcttctcataaaactatgcttcctcaaaatgatgcttgaatgagctcaaaaagattatagaatgctagaaatatatggaacagattgtaatgtctgttt |
3408 |
T |
|
| Q |
278 |
tctatgaaatagatccatc |
296 |
Q |
| |
|
| || || ||||||||||| |
|
|
| T |
3409 |
tttacgacatagatccatc |
3427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 167561 - 167677
Alignment:
| Q |
105 |
tgagcttgaaaaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctca |
204 |
Q |
| |
|
||||||| |||||||||| ||||||||| || |||| |||||||| |||||| ||| ||||||||| |||||||||||| || |||||||||||||| |
|
|
| T |
167561 |
tgagcttcaaaaaggagatgagatctcgccaacactcatcaaagccattgaggagtaacatgcatctattgtcatcttctcagaaaactatgcttcctca |
167660 |
T |
|
| Q |
205 |
aaatggtgcttgaatga |
221 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
167661 |
taatggtgcttgaatga |
167677 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 167495 - 167542
Alignment:
| Q |
18 |
ctttcgtggtgaggatactcgtagaaacttcacaagccatatttatga |
65 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
167495 |
ctttcgaggtgaggatactcgcagaaacttcacaagccatctttatga |
167542 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 6097933 - 6097884
Alignment:
| Q |
181 |
ttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcctcaa |
230 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
6097933 |
ttctcagaaaactatgcttcctcaaaatggtgtttggatgaactcctcaa |
6097884 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 282
Target Start/End: Complemental strand, 6047253 - 6047171
Alignment:
| Q |
200 |
cctcaaaatggtgcttgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctat |
282 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || || |||||||| ||| | |||| || |||| |||||||| |||||| |
|
|
| T |
6047253 |
cctcaaagtggtgcttgaatgaactcctcaaaatacttgaatgcaaaaaacttcatggtcaagttgttatacctgtgttctat |
6047171 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 6179903 - 6179786
Alignment:
| Q |
181 |
ttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttct |
280 |
Q |
| |
|
|||||| || ||||||| ||||||| ||||||||| ||||||||||| | || ||| |||||| ||| || |||| ||| | || |||||||| |||| |
|
|
| T |
6179903 |
ttctcagaaaactatgcaacctcaaagtggtgcttggatgaactcctccatatactacaatgcagaaaacatcatggtcaggtagtaatacctgtgttct |
6179804 |
T |
|
| Q |
281 |
atgaaatagatccatcac |
298 |
Q |
| |
|
|| | |||||||| |||| |
|
|
| T |
6179803 |
ataacatagatccttcac |
6179786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 6188677 - 6188560
Alignment:
| Q |
181 |
ttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcctcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttct |
280 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||| |||||||| || | || || |||||| ||| ||||||||| | || |||||||| |||| |
|
|
| T |
6188677 |
ttctcaaaagactatgcaacttcaaagtggtgcttggatgaactcgtccacatacttcaatgcagaaaacttaatggacatgtagttatacctgtgttct |
6188578 |
T |
|
| Q |
281 |
atgaaatagatccatcac |
298 |
Q |
| |
|
|| | ||||||||||||| |
|
|
| T |
6188577 |
ataacatagatccatcac |
6188560 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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