View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1956_low_2 (Length: 573)
Name: NF1956_low_2
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1956_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 19 - 563
Target Start/End: Original strand, 42661802 - 42662346
Alignment:
| Q |
19 |
tatttactattaagcatatagagaaagtaggcaaccttgaggtagatatcaattgcacggtaaataccatcatccaaggtcctagcacaatcaggaataa |
118 |
Q |
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| T |
42661802 |
tatttactattaagcatatagagaaagtaggcaaccttgaggtagatatcaattgcacggtaaataccatcatccaaggtcctagcacaatcaggaataa |
42661901 |
T |
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| Q |
119 |
cagcagcaagtgactgaaattttggaaatttcaagttgacatcaggtgctacttcagctaagtaactatccatcaaatcagcaacttttgtcattggagt |
218 |
Q |
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| T |
42661902 |
cagcagcaagtgactgaaattttggaaatttcaagttgacatcaggtgctacttcagctaagtaactatccatcaaatcagcaacttttgtcattggagt |
42662001 |
T |
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| Q |
219 |
agcacgttgacaatttgcaccaatgcgtctctcttccacgacaatatcattattagatgtagaatcagcatcatcattatcaacaatcatgaaatgatca |
318 |
Q |
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| T |
42662002 |
agcacgttgacaatttccaacaatgcgtctctcttcctcaacaatatcattattagatgtagaatcagcatcatcattatcaacaatcatgaaatgatca |
42662101 |
T |
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| Q |
319 |
agcattctttgaacacaatcaatatcatggattgtctccattgagtaaccaatgttaggaatcaagagatcttcaagatcagcttcatctaattgaaaac |
418 |
Q |
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| T |
42662102 |
agcattctttgaacacaatcaatatcatggattgtctccattgagtaaccaatgttaggaatcaagagatcttcaagatcagcttcatctaattgaaaac |
42662201 |
T |
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| Q |
419 |
caattcttttctccaagcttgcacaacaacaagagcttgcatataaagccatagctgttcttaaacttctaagcaaaaatttagtttgtgttacaccctt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662202 |
caattcttttctccaagcttgcacaacaacaagagcttgcatataaagccatagctgttcttaaacttctaagcaaaaatttagtttgtgttacaccctt |
42662301 |
T |
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| Q |
519 |
ttcatttggaagcaactcaactatttcttcaatcagattcctttg |
563 |
Q |
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| T |
42662302 |
ttcatttggaagcaactcaactatttcttcaatcagattcctttg |
42662346 |
T |
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