View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1956_low_20 (Length: 250)
Name: NF1956_low_20
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1956_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 38154425 - 38154562
Alignment:
| Q |
1 |
ttttggtccattcggattggattcgggaaacaaagacatgttttacttattgataggtaattaccatgaacttggcaaagttgatgtgtcttt--nnnnn |
98 |
Q |
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| T |
38154425 |
ttttggtccattcggattggattcgggaaacaaagacatgttttacttattgataggtaattaccatgaacttggcaaagttgatgtgtctttaaaaaaa |
38154524 |
T |
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| Q |
99 |
nnngtgactttcttgttggttaataagactaacgtgtt |
136 |
Q |
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| T |
38154525 |
aaagtgactttcttgttggttaataagactaacgtgtt |
38154562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 38154649 - 38154702
Alignment:
| Q |
181 |
aatgggcatttcactataatattgtaatttcttgtttaaaaatagcatacttca |
234 |
Q |
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| T |
38154649 |
aatgggcatttcactttaatattgtaatttcttgtttaagaatagcatacttca |
38154702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 38154732 - 38154785
Alignment:
| Q |
181 |
aatgggcatttcactataatattgtaatttcttgtttaaaaatagcatacttca |
234 |
Q |
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| T |
38154732 |
aatgggcatttcactttaatattgtaatttcttgtttaagaatagcatacttca |
38154785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 38154585 - 38154619
Alignment:
| Q |
200 |
tattgtaatttcttgtttaaaaatagcatacttca |
234 |
Q |
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| T |
38154585 |
tattgtaatttcttgtttaagaatagcatacttca |
38154619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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