View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1956_low_22 (Length: 246)

Name: NF1956_low_22
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1956_low_22
NF1956_low_22
[»] chr4 (3 HSPs)
chr4 (11-235)||(52248928-52249152)
chr4 (84-186)||(41126159-41126261)
chr4 (86-185)||(41119767-41119866)
[»] chr2 (3 HSPs)
chr2 (11-83)||(20028323-20028395)
chr2 (11-77)||(20018124-20018190)
chr2 (11-66)||(20008931-20008986)
[»] chr1 (2 HSPs)
chr1 (11-83)||(12574781-12574853)
chr1 (32-83)||(12587000-12587051)
[»] chr5 (1 HSPs)
chr5 (83-186)||(4320754-4320857)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 52249152 - 52248928
Alignment:
Q  11 aagaaagtaaaagactgtcaaacaggaaatcagctaaaagatcaaaaataaagaaacaggtacatactagacctattaaccttggagtaatcgaagttgc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52249152 aagaaagtaaaagactgtcaaacaggaaatcagctaaaagatcaaagataaagaaacaggtacatactagacctattaaccttgaagtaatcgaagttgc 52249053  T
Q  111 aaaatttaagtcgaggggatggatttccatccaagagagtgtttttcaatttgagatctctatgacgaatttcctgaagtgtaatataagagagtgcttg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52249052 aaaatttaagtcgaggggatggatttccatccaagagagtgtttttcaatttgagatctctatgacgaatttcctaaagtgtaatataagagagtgcttg 52248953  T
Q  211 gataccattgaatgatagtagctaa 235  Q
    |||||||||||||||||||||||||    
T  52248952 gataccattgaatgatagtagctaa 52248928  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 41126261 - 41126159
Alignment:
Q  84 tattaaccttggagtaatcgaagttgcaaaatttaagtcgaggggatggatttccatccaagagagtgtttttcaatttgagatctctatgacgaatttc 183  Q
    ||||||||||||||||| | ||||  |||| |||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||    
T  41126261 tattaaccttggagtaaccaaagtcacaaattttaagccgaggggatggatttccatccaagagagtgttttccaatttcagatctctatgacaaatttc 41126162  T
Q  184 ctg 186  Q
    |||    
T  41126161 ctg 41126159  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 41119866 - 41119767
Alignment:
Q  86 ttaaccttggagtaatcgaagttgcaaaatttaagtcgaggggatggatttccatccaagagagtgtttttcaatttgagatctctatgacgaatttcct 185  Q
    ||||||||||||||||| || ||| ||| ||||||  |||||||||||||||||||||| |||||||||| |||||| ||| || |||||| ||||||||    
T  41119866 ttaaccttggagtaatcaaaattgaaaattttaagctgaggggatggatttccatccaatagagtgttttccaatttcagacctgtatgacaaatttcct 41119767  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 20028395 - 20028323
Alignment:
Q  11 aagaaagtaaaagactgtcaaacaggaaatcagctaaaagatcaaaaataaagaaacaggtacatactagacc 83  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  20028395 aagaaagaaaaagactgtcaaacaggaaatcagctaaaagatcaaagataaagaaacaggtacgtactagacc 20028323  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 20018190 - 20018124
Alignment:
Q  11 aagaaagtaaaagactgtcaaacaggaaatcagctaaaagatcaaaaataaagaaacaggtacatac 77  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  20018190 aagaaagaaaaagactgtcgaacaggaaatcagctaaaagatcaaagataaagaaacaggtacatac 20018124  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 20008986 - 20008931
Alignment:
Q  11 aagaaagtaaaagactgtcaaacaggaaatcagctaaaagatcaaaaataaagaaa 66  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  20008986 aagaaagaaaaagactgtcaaacaggaaatcagctcaaagatcaaaggtaaagaaa 20008931  T

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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 12574781 - 12574853
Alignment:
Q  11 aagaaagtaaaagactgtcaaacaggaaatcagctaaaagatcaaaaataaagaaacaggtacatactagacc 83  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12574781 aagaaagaaaaaggttgtcaaacaggaaatcagctaaaagatcaaagataaagaaacaggtacatactagacc 12574853  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 12587000 - 12587051
Alignment:
Q  32 acaggaaatcagctaaaagatcaaaaataaagaaacaggtacatactagacc 83  Q
    ||||| ||||||||||||||||||  |||||||||||||||| |||||||||    
T  12587000 acagggaatcagctaaaagatcaaggataaagaaacaggtacgtactagacc 12587051  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 4320754 - 4320857
Alignment:
Q  83 ctattaaccttggagtaatcgaagttgcaaaatttaagtcgaggggatggatttccatccaagagagtgtttttcaatttgagatctctatgacgaattt 182  Q
    ||||||||||||||| || | ||||  |||| ||||| |||||| | |||| |||||||||| | |||||| | |||||| ||||||||||||| |||||    
T  4320754 ctattaaccttggagaaaccaaagtcacaaattttaactcgaggagctggacttccatccaataaagtgttctccaattttagatctctatgacaaattt 4320853  T
Q  183 cctg 186  Q
    ||||    
T  4320854 cctg 4320857  T

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