View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1956_low_23 (Length: 244)

Name: NF1956_low_23
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1956_low_23
NF1956_low_23
[»] chr6 (9 HSPs)
chr6 (16-244)||(3406580-3406807)
chr6 (188-237)||(28757036-28757085)
chr6 (185-228)||(13583546-13583589)
chr6 (189-235)||(6503261-6503307)
chr6 (185-239)||(24438292-24438346)
chr6 (185-238)||(788863-788916)
chr6 (185-241)||(5340077-5340132)
chr6 (185-237)||(10320443-10320495)
chr6 (187-235)||(10497166-10497214)
[»] chr3 (15 HSPs)
chr3 (185-239)||(53633627-53633681)
chr3 (186-228)||(19126547-19126589)
chr3 (185-234)||(33771687-33771736)
chr3 (185-233)||(51250249-51250297)
chr3 (185-228)||(21967553-21967596)
chr3 (185-228)||(21989989-21990032)
chr3 (188-239)||(22843464-22843515)
chr3 (188-235)||(38898223-38898270)
chr3 (185-239)||(7464501-7464555)
chr3 (188-234)||(37465360-37465406)
chr3 (185-239)||(48315034-48315088)
chr3 (185-235)||(48376832-48376882)
chr3 (184-238)||(53221954-53222008)
chr3 (184-233)||(17035929-17035978)
chr3 (188-244)||(42269298-42269354)
[»] chr7 (9 HSPs)
chr7 (187-239)||(34000261-34000313)
chr7 (182-235)||(21164772-21164825)
chr7 (184-241)||(28012622-28012679)
chr7 (185-244)||(16355510-16355569)
chr7 (185-239)||(7388049-7388103)
chr7 (186-244)||(21136829-21136887)
chr7 (185-239)||(36755012-36755065)
chr7 (185-239)||(36760809-36760862)
chr7 (186-238)||(36980992-36981044)
[»] chr1 (14 HSPs)
chr1 (188-244)||(40162519-40162575)
chr1 (182-241)||(8384245-8384304)
chr1 (187-238)||(47719118-47719169)
chr1 (193-239)||(3736629-3736675)
chr1 (185-231)||(6094419-6094465)
chr1 (184-238)||(50849084-50849138)
chr1 (189-244)||(30548096-30548151)
chr1 (185-236)||(30678826-30678877)
chr1 (184-234)||(29800529-29800579)
chr1 (188-242)||(41926822-41926876)
chr1 (189-235)||(43284044-43284090)
chr1 (184-237)||(3777714-3777767)
chr1 (185-234)||(10480711-10480760)
chr1 (185-234)||(49875614-49875663)
[»] chr4 (13 HSPs)
chr4 (182-241)||(27179724-27179783)
chr4 (185-228)||(54151646-54151689)
chr4 (185-235)||(21465608-21465658)
chr4 (188-237)||(47704582-47704631)
chr4 (193-244)||(3970010-3970061)
chr4 (185-244)||(5185125-5185184)
chr4 (186-244)||(2587705-2587763)
chr4 (185-235)||(30380527-30380577)
chr4 (185-239)||(37193246-37193300)
chr4 (186-235)||(52699371-52699420)
chr4 (194-234)||(2228411-2228451)
chr4 (186-234)||(29908054-29908102)
chr4 (190-242)||(38147555-38147607)
[»] chr2 (9 HSPs)
chr2 (185-239)||(31837946-31838000)
chr2 (188-239)||(4238759-4238810)
chr2 (188-238)||(19189855-19189905)
chr2 (185-239)||(21482529-21482583)
chr2 (189-242)||(10991543-10991596)
chr2 (188-232)||(14944162-14944206)
chr2 (189-237)||(26133532-26133580)
chr2 (188-228)||(36547256-36547296)
chr2 (188-244)||(41682392-41682448)
[»] chr8 (10 HSPs)
chr8 (185-234)||(21557430-21557479)
chr8 (187-236)||(36919310-36919359)
chr8 (186-238)||(12249496-12249548)
chr8 (189-235)||(8984508-8984554)
chr8 (186-232)||(15188897-15188943)
chr8 (184-234)||(19701359-19701409)
chr8 (185-235)||(35149274-35149324)
chr8 (186-239)||(10982724-10982777)
chr8 (185-234)||(37999435-37999484)
chr8 (185-241)||(35682700-35682756)
[»] chr5 (12 HSPs)
chr5 (185-234)||(1512852-1512901)
chr5 (185-234)||(2249431-2249480)
chr5 (187-234)||(3671217-3671264)
chr5 (184-235)||(23118065-23118116)
chr5 (186-236)||(31545869-31545919)
chr5 (186-235)||(8682408-8682457)
chr5 (187-244)||(21316881-21316938)
chr5 (188-237)||(27651542-27651591)
chr5 (185-234)||(33645704-33645753)
chr5 (186-242)||(15725321-15725377)
chr5 (187-239)||(34702489-34702541)
chr5 (186-238)||(40034399-40034451)
[»] scaffold1063 (1 HSPs)
scaffold1063 (186-234)||(1075-1123)
[»] scaffold0027 (1 HSPs)
scaffold0027 (187-234)||(61585-61632)
[»] scaffold0262 (1 HSPs)
scaffold0262 (185-234)||(15945-15994)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 3406580 - 3406807
Alignment:
Q  16 atatataaacttagaatagttagtagcgtaacttatatttgccctcgaaaaggttcaaatgcatgatttatttatttttgggtgagatgatatgggtgtt 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3406580 atatgtaaacttagaatagttagtagcgtaacttatatttgccctcgaaaaggttcaaatgcatgatttatttatttttgggtga-atgatatgggtgtt 3406678  T
Q  116 tgaatccttatattcgtgagtcccttctattgttgttcccaaactagtgagcagaggatcatgtcggctctcgtgagcttaactcagttagtaaggataa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| ||    
T  3406679 tgaatccttatattcgtgagtcccttctattgttgttcccaaactagtgagcagaggattatgtcggctctcatgagcttagctcagttagtaaggacaa 3406778  T
Q  216 tgtaaaatatatgtaaggttcgggttcaa 244  Q
    ||||||||||||||| |||| ||||||||    
T  3406779 tgtaaaatatatgtatggtttgggttcaa 3406807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 28757085 - 28757036
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcg 237  Q
    ||||||||||||||||| ||||||| |||||| |||||||| ||||||||    
T  28757085 gtgagcttaactcagttggtaaggacaatgtataatatatgcaaggttcg 28757036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 13583546 - 13583589
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatg 228  Q
    |||||||||||||||| ||| |||||||||||||| ||||||||    
T  13583546 ctcgtgagcttaactcggttggtaaggataatgtataatatatg 13583589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 6503261 - 6503307
Alignment:
Q  189 tgagcttaactcagttagtaaggataatgtaaaatatatgtaaggtt 235  Q
    ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  6503261 tgagcttaactcaattgttaaggataatgtataatatatgtaaggtt 6503307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 24438346 - 24438292
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    ||||||| |||||||||||| ||||| |||||| | ||||||||||| |||||||    
T  24438346 ctcgtgaacttaactcagttggtaagaataatgcataatatatgtaaagttcggg 24438292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 788863 - 788916
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgg 238  Q
    |||||||||||| ||||||| ||||||| |||| | |||||||| |||||||||    
T  788863 ctcgtgagcttatctcagttggtaaggacaatgcataatatatgcaaggttcgg 788916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 5340077 - 5340132
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggtt 241  Q
    |||||||| |||||||| || ||| |||||||||| |||||||| ||||||||||||    
T  5340077 ctcgtgagtttaactcaattggta-ggataatgtataatatatgcaaggttcgggtt 5340132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 10320495 - 10320443
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcg 237  Q
    |||||||||||||||||||| ||||| | ||||||  |||||| |||||||||    
T  10320495 ctcgtgagcttaactcagttggtaagaacaatgtatcatatatataaggttcg 10320443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 10497214 - 10497166
Alignment:
Q  187 cgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggtt 235  Q
    ||||| |||||||||||| ||||||| |||| | |||||||||||||||    
T  10497214 cgtgaacttaactcagtttgtaaggacaatgcataatatatgtaaggtt 10497166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 53633681 - 53633627
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||||| ||||    
T  53633681 ctcgtgagcttaactcagttggtaaggataatgcataatatatgtaaggtccggg 53633627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 19126547 - 19126589
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatg 228  Q
    |||||||||||||||||||||||||||||||| | ||||||||    
T  19126547 tcgtgagcttaactcagttagtaaggataatgcataatatatg 19126589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 33771687 - 33771736
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    |||||||||||||||||||| ||||||| |||||| |||||||| |||||    
T  33771687 ctcgtgagcttaactcagttggtaaggacaatgtataatatatgcaaggt 33771736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 51250297 - 51250249
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaagg 233  Q
    |||||||||||||||||||| ||||||| |||||| |||||||| ||||    
T  51250297 ctcgtgagcttaactcagttggtaaggacaatgtataatatatgcaagg 51250249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 21967553 - 21967596
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatg 228  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||    
T  21967553 ctcgtgagcttaactcagttggtaaggacaatgtataatatatg 21967596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 21989989 - 21990032
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatg 228  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||    
T  21989989 ctcgtgagcttaactcagttggtaaggacaatgtataatatatg 21990032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 22843464 - 22843515
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    ||||||||| |||||||||||| || |||| | |||||||||||||||||||    
T  22843464 gtgagcttagctcagttagtaaagacaatgcataatatatgtaaggttcggg 22843515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 38898270 - 38898223
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggtt 235  Q
    ||||||||| ||||||| ||||||| |||||| |||||||||||||||    
T  38898270 gtgagcttatctcagttggtaaggacaatgtataatatatgtaaggtt 38898223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 7464555 - 7464501
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    |||||||||||||||||||| ||| ||| |||| | |||||||||||||| ||||    
T  7464555 ctcgtgagcttaactcagttggtagggacaatgcataatatatgtaaggtccggg 7464501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 37465360 - 37465406
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    ||||||||||||||||| |||| ||||||||| |||||||| |||||    
T  37465360 gtgagcttaactcagtttgtaacgataatgtataatatatgcaaggt 37465406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 48315088 - 48315034
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    |||||||||||| ||||||| |||||||||||| | |||||||| ||||| ||||    
T  48315088 ctcgtgagcttagctcagttggtaaggataatgcataatatatgcaaggtccggg 48315034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 48376832 - 48376882
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggtt 235  Q
    |||||||||||| ||||||| |||| ||||||| | |||||||||||||||    
T  48376832 ctcgtgagcttagctcagttggtaaagataatgcataatatatgtaaggtt 48376882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 53221954 - 53222008
Alignment:
Q  184 tctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgg 238  Q
    |||| ||| ||||||||||||  |||||| |||||| ||||||||||||||||||    
T  53221954 tctcatgaacttaactcagttgataaggacaatgtataatatatgtaaggttcgg 53222008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 17035978 - 17035929
Alignment:
Q  184 tctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaagg 233  Q
    ||||||||  |||||| |||| |||||||||||||| |||||||||||||    
T  17035978 tctcgtgaatttaacttagttggtaaggataatgtataatatatgtaagg 17035929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 42269298 - 42269354
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttcaa 244  Q
    ||||| ||| ||||||||||| ||| |||| | ||||||||||||||||| ||||||    
T  42269298 gtgagtttagctcagttagtatggacaatgcataatatatgtaaggttcgagttcaa 42269354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 34000261 - 34000313
Alignment:
Q  187 cgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    ||||||||||||||||||  ||||||||||| | |||||||||||||||||||    
T  34000261 cgtgagcttaactcagttgataaggataatgcataatatatgtaaggttcggg 34000313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 21164825 - 21164772
Alignment:
Q  182 gctctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggtt 235  Q
    ||||||||||||||||||||||| ||| |||||||| | ||||||| |||||||    
T  21164825 gctctcgtgagcttaactcagttggtatggataatgcataatatatataaggtt 21164772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 28012679 - 28012622
Alignment:
Q  184 tctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggtt 241  Q
    ||||||||||||||||||||| ||||||| |||| | ||||||||  |||||||||||    
T  28012679 tctcgtgagcttaactcagttggtaaggacaatgcataatatatgggaggttcgggtt 28012622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 16355510 - 16355569
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttcaa 244  Q
    |||||||||||||||||||| |||  || | |||| ||||||||||||||| ||||||||    
T  16355510 ctcgtgagcttaactcagttggtagagacattgtataatatatgtaaggttggggttcaa 16355569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 7388103 - 7388049
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    |||||||||||||||||||| ||  ||| |||| | |||||||||||||||||||    
T  7388103 ctcgtgagcttaactcagttggttgggacaatgcataatatatgtaaggttcggg 7388049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 21136829 - 21136887
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttcaa 244  Q
    ||||||||||||||||||| ||| ||| |||||| |||||||| ||||||  |||||||    
T  21136829 tcgtgagcttaactcagttggtatggacaatgtataatatatgcaaggttgaggttcaa 21136887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 36755012 - 36755065
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    |||||||||||||||||||| || |||| |||| | |||||||||||||||||||    
T  36755012 ctcgtgagcttaactcagttggt-aggacaatgcataatatatgtaaggttcggg 36755065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 36760809 - 36760862
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    |||||||||||||||||||| || |||| |||| | |||||||||||||||||||    
T  36760809 ctcgtgagcttaactcagttggt-aggacaatgcataatatatgtaaggttcggg 36760862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 36980992 - 36981044
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgg 238  Q
    ||||||||||| || ||||||||  || |||||| ||||||||||||||||||    
T  36980992 tcgtgagcttagcttagttagtatagacaatgtataatatatgtaaggttcgg 36981044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 40162575 - 40162519
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttcaa 244  Q
    ||||| ||||||||||||| | |||||||||| ||||| ||||||||||||||||||    
T  40162575 gtgagtttaactcagttagcagggataatgtataatatctgtaaggttcgggttcaa 40162519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 8384245 - 8384304
Alignment:
Q  182 gctctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggtt 241  Q
    |||||||||||||||  |||||||||| | |||||||| |||||||| ||||||||||||    
T  8384245 gctctcgtgagcttagttcagttagtatgaataatgtataatatatgcaaggttcgggtt 8384304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 47719169 - 47719118
Alignment:
Q  187 cgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgg 238  Q
    |||||||||||||||||| |||||||||||| | |||||||| |||||||||    
T  47719169 cgtgagcttaactcagttggtaaggataatgcataatatatgcaaggttcgg 47719118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 3736629 - 3736675
Alignment:
Q  193 cttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    |||| |||||||||||||||||||||| ||||||||||| |||||||    
T  3736629 cttagctcagttagtaaggataatgtataatatatgtaaagttcggg 3736675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 6094419 - 6094465
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaa 231  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||    
T  6094419 ctcgtgagcttaactcagttggtatggataatgtataatatatgtaa 6094465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 50849138 - 50849084
Alignment:
Q  184 tctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgg 238  Q
    ||||||||||||||||||||| |||| || |||| | ||||||||||||||||||    
T  50849138 tctcgtgagcttaactcagttggtaatgacaatgcataatatatgtaaggttcgg 50849084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 30548151 - 30548096
Alignment:
Q  189 tgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttcaa 244  Q
    ||||||||||| |||| ||||||| |||| | |||||||| |||||||||||||||    
T  30548151 tgagcttaacttagttggtaaggacaatgcataatatatgcaaggttcgggttcaa 30548096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 30678877 - 30678826
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttc 236  Q
    |||||||||||||||||||| ||| ||| |||| | ||||||||||||||||    
T  30678877 ctcgtgagcttaactcagttggtagggacaatgcataatatatgtaaggttc 30678826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 29800529 - 29800579
Alignment:
Q  184 tctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    ||||||||||||||||||||| |||||||||||| | || ||||| |||||    
T  29800529 tctcgtgagcttaactcagttggtaaggataatgcataaaatatgcaaggt 29800579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 41926822 - 41926876
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttc 242  Q
    ||||||||| ||||||| ||||||| |||| | |||||||||||||| |||||||    
T  41926822 gtgagcttagctcagttggtaaggacaatgcataatatatgtaaggtccgggttc 41926876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 43284090 - 43284044
Alignment:
Q  189 tgagcttaactcagttagtaaggataatgtaaaatatatgtaaggtt 235  Q
    ||||||||||||||||||||  || |||||| |||||||||||||||    
T  43284090 tgagcttaactcagttagtagagacaatgtataatatatgtaaggtt 43284044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 3777714 - 3777767
Alignment:
Q  184 tctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcg 237  Q
    |||||||||||||||||||||  || |||||||||| |||||||  ||||||||    
T  3777714 tctcgtgagcttaactcagttgatatggataatgtataatatatacaaggttcg 3777767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 10480711 - 10480760
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    |||||||||||||||||| | ||||||| |||| | ||||||||||||||    
T  10480711 ctcgtgagcttaactcagatggtaaggacaatgcataatatatgtaaggt 10480760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 49875663 - 49875614
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    |||||||||||||||||||| ||||||| |||| | |||||||| |||||    
T  49875663 ctcgtgagcttaactcagttggtaaggacaatgcataatatatgcaaggt 49875614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 27179783 - 27179724
Alignment:
Q  182 gctctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggtt 241  Q
    |||||||||||||||  |||||||||| | |||||||| |||||||| ||||||||||||    
T  27179783 gctctcgtgagcttagttcagttagtatgaataatgtataatatatgcaaggttcgggtt 27179724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 54151689 - 54151646
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatg 228  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    
T  54151689 ctcgtgagcttaactcagttggtaaggataatgtataatatatg 54151646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 21465608 - 21465658
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggtt 235  Q
    |||||||| ||||||||||||||||||| |||| | |||||||||||||||    
T  21465608 ctcgtgagtttaactcagttagtaaggacaatgcataatatatgtaaggtt 21465658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 47704582 - 47704631
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcg 237  Q
    ||||||||||||||||| ||| | |||||||| |||||||||||||||||    
T  47704582 gtgagcttaactcagttggtatgaataatgtataatatatgtaaggttcg 47704631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 3970061 - 3970010
Alignment:
Q  193 cttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttcaa 244  Q
    ||||||||||||||||| || |||||| |||||||| ||||||| |||||||    
T  3970061 cttaactcagttagtaaagacaatgtataatatatgcaaggttcaggttcaa 3970010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 5185125 - 5185184
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttcaa 244  Q
    |||||||| ||||||||||| |||  ||||||||| |||||||||||||| | |||||||    
T  5185125 ctcgtgagtttaactcagttggtatagataatgtataatatatgtaaggtccaggttcaa 5185184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 2587763 - 2587705
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttcaa 244  Q
    ||||||||||| |||| || ||| |||||||| | |||||||||||||| |||||||||    
T  2587763 tcgtgagcttagctcaattggtatggataatgcataatatatgtaaggtccgggttcaa 2587705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 30380527 - 30380577
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggtt 235  Q
    |||||||| ||||||||||| ||||||| |||||| |||||||| ||||||    
T  30380527 ctcgtgagtttaactcagttggtaaggacaatgtataatatatgcaaggtt 30380577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 37193246 - 37193300
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    |||||||||||| ||||||||||| ||| |||||| |||||||| ||||| ||||    
T  37193246 ctcgtgagcttagctcagttagtatggacaatgtataatatatgcaaggtccggg 37193300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 52699371 - 52699420
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggtt 235  Q
    ||||||||||| |||| |||||||| |||||| | |||||||||||||||    
T  52699371 tcgtgagcttatctcaattagtaagaataatgcataatatatgtaaggtt 52699420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 2228451 - 2228411
Alignment:
Q  194 ttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    ||||||||||||||||| |||||| | ||||||||||||||    
T  2228451 ttaactcagttagtaagaataatgcataatatatgtaaggt 2228411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 29908054 - 29908102
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    ||||||||||||||||||| ||||||| |||| | |||||||| |||||    
T  29908054 tcgtgagcttaactcagttggtaaggacaatgcataatatatgcaaggt 29908102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 38147607 - 38147555
Alignment:
Q  190 gagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttc 242  Q
    ||||||||||||||| |||| || ||| || |||||||| |||||||||||||    
T  38147607 gagcttaactcagttggtaaagacaatttataatatatgcaaggttcgggttc 38147555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 31838000 - 31837946
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    ||||||| ||||||||| || ||| |||||||||| |||||||||||||||||||    
T  31838000 ctcgtgaacttaactcaattggtatggataatgtataatatatgtaaggttcggg 31837946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 4238759 - 4238810
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    ||||||||| ||||||||||| ||| |||| | |||||||||||||||||||    
T  4238759 gtgagcttagctcagttagtatggacaatgcataatatatgtaaggttcggg 4238810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 19189905 - 19189855
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgg 238  Q
    ||||||||||||||||||||| ||| |||||| || ||||| |||||||||    
T  19189905 gtgagcttaactcagttagtatggacaatgtataaaatatgcaaggttcgg 19189855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 21482583 - 21482529
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    |||||||| ||| ||||||| |||||||||||||| |||||||| ||||| ||||    
T  21482583 ctcgtgagtttagctcagttggtaaggataatgtataatatatgcaaggtccggg 21482529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 10991543 - 10991596
Alignment:
Q  189 tgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttc 242  Q
    |||||||||||||||| ||||||| |||  | |||||||||||||| |||||||    
T  10991543 tgagcttaactcagttggtaaggacaatacataatatatgtaaggtccgggttc 10991596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 14944162 - 14944206
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatgtaag 232  Q
    |||||||||||||| |||||||||| |||| | ||||||||||||    
T  14944162 gtgagcttaactcacttagtaaggacaatgcataatatatgtaag 14944206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 26133580 - 26133532
Alignment:
Q  189 tgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcg 237  Q
    |||||||||||||||| ||||||| |||| | |||||||| ||||||||    
T  26133580 tgagcttaactcagttggtaaggacaatgcataatatatgcaaggttcg 26133532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 36547296 - 36547256
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatg 228  Q
    ||||||||| ||||||| |||||||||||||| ||||||||    
T  36547296 gtgagcttagctcagttggtaaggataatgtataatatatg 36547256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 41682448 - 41682392
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttcaa 244  Q
    ||||||||||||||||| |||   |||||| | ||||||||||||||| ||||||||    
T  41682448 gtgagcttaactcagttggtataaataatgcataatatatgtaaggttagggttcaa 41682392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 21557430 - 21557479
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    |||||||||||||||||||||||| ||| |||| | ||||||||||||||    
T  21557430 ctcgtgagcttaactcagttagtatggacaatgcataatatatgtaaggt 21557479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 36919310 - 36919359
Alignment:
Q  187 cgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttc 236  Q
    |||||||||||||||||| ||||| | |||||| ||||||||||||||||    
T  36919310 cgtgagcttaactcagttggtaagaacaatgtataatatatgtaaggttc 36919359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 12249548 - 12249496
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgg 238  Q
    |||||||||||||||| || |||| ||||||||| |||||||| |||||||||    
T  12249548 tcgtgagcttaactcaattggtaaagataatgtataatatatgcaaggttcgg 12249496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 8984554 - 8984508
Alignment:
Q  189 tgagcttaactcagttagtaaggataatgtaaaatatatgtaaggtt 235  Q
    |||||||||||||||| ||| |||||||||| |||||||| ||||||    
T  8984554 tgagcttaactcagttggtatggataatgtataatatatgcaaggtt 8984508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 15188897 - 15188943
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaag 232  Q
    ||||||||||||||||||||||| ||| |||| | ||||||||||||    
T  15188897 tcgtgagcttaactcagttagtatggacaatgcataatatatgtaag 15188943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 19701409 - 19701359
Alignment:
Q  184 tctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    ||||||||| |||||||||||  ||||||||||| | ||||||||||||||    
T  19701409 tctcgtgagtttaactcagttgataaggataatgcataatatatgtaaggt 19701359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 35149324 - 35149274
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggtt 235  Q
    ||||||||||||  ||| ||||||||||||||||| || ||||||||||||    
T  35149324 ctcgtgagcttagttcaattagtaaggataatgtataaaatatgtaaggtt 35149274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 10982724 - 10982777
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    ||||||||||||||||||| ||| ||| ||| || |||||||| ||||||||||    
T  10982724 tcgtgagcttaactcagttggtatggacaatatataatatatgcaaggttcggg 10982777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 37999484 - 37999435
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    |||||||||||||||||||| ||| |||||||| | |||||||| |||||    
T  37999484 ctcgtgagcttaactcagttggtatggataatgcataatatatgcaaggt 37999435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 35682756 - 35682700
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggtt 241  Q
    |||||||||||| ||||||| ||| ||| |||  | |||||||||||||||||||||    
T  35682756 ctcgtgagcttagctcagttggtacggacaatccataatatatgtaaggttcgggtt 35682700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 1512852 - 1512901
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    |||||||||||||||||||||||| ||| |||| | ||||||||||||||    
T  1512852 ctcgtgagcttaactcagttagtagggacaatgcataatatatgtaaggt 1512901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 2249480 - 2249431
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    |||||||||||||||||||||||||||| |||  | ||||||||||||||    
T  2249480 ctcgtgagcttaactcagttagtaaggacaatacataatatatgtaaggt 2249431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 3671217 - 3671264
Alignment:
Q  187 cgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    ||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  3671217 cgtgagcttaactcagttgataaggataatgtataatatatgcaaggt 3671264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 23118116 - 23118065
Alignment:
Q  184 tctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggtt 235  Q
    |||||||||||||||||||||  |||||| |||| | |||||||||||||||    
T  23118116 tctcgtgagcttaactcagttgataaggacaatgcataatatatgtaaggtt 23118065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 31545869 - 31545919
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttc 236  Q
    ||||||||||||||||||| || ||||||||| | |||||||| |||||||    
T  31545869 tcgtgagcttaactcagttggttaggataatgcataatatatgcaaggttc 31545919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 8682457 - 8682408
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggtt 235  Q
    |||||| |||||||||||||||| ||| |||| | |||||||||||||||    
T  8682457 tcgtgaccttaactcagttagtagggacaatgcataatatatgtaaggtt 8682408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 21316881 - 21316938
Alignment:
Q  187 cgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttcaa 244  Q
    |||||| ||||||||||| ||||||| |||| | |||||||| ||||| |||||||||    
T  21316881 cgtgagtttaactcagttggtaaggacaatgcataatatatgaaaggtccgggttcaa 21316938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 27651591 - 27651542
Alignment:
Q  188 gtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcg 237  Q
    |||||||||||| |||| ||||||| |||| | |||||||||||||||||    
T  27651591 gtgagcttaacttagttggtaaggacaatgcataatatatgtaaggttcg 27651542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 33645753 - 33645704
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    |||||||||||||||||||| ||| ||| |||||| |||||||| |||||    
T  33645753 ctcgtgagcttaactcagttggtatggacaatgtataatatatgcaaggt 33645704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 15725377 - 15725321
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgggttc 242  Q
    ||||||||||||||||||||||| | | |||||| |||||||  ||||| |||||||    
T  15725377 tcgtgagcttaactcagttagtatgaacaatgtataatatatacaaggtccgggttc 15725321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 34702489 - 34702541
Alignment:
Q  187 cgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcggg 239  Q
    |||||||||||||||||| ||||||| |||| | |||||||| ||||| ||||    
T  34702489 cgtgagcttaactcagttggtaaggacaatgcataatatatgaaaggtccggg 34702541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 40034451 - 40034399
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggttcgg 238  Q
    ||||||||||| |||| || ||| ||| |||||| ||||||||||||||||||    
T  40034451 tcgtgagcttagctcaattcgtatggacaatgtataatatatgtaaggttcgg 40034399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 1123 - 1075
Alignment:
Q  186 tcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    ||||||||||||||||||||||| ||| |||| | ||||||||||||||    
T  1123 tcgtgagcttaactcagttagtagggacaatgcataatatatgtaaggt 1075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 61632 - 61585
Alignment:
Q  187 cgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    |||||||||||||||||| |||||||||||| | ||| ||||||||||    
T  61632 cgtgagcttaactcagttggtaaggataatgcataatgtatgtaaggt 61585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 15994 - 15945
Alignment:
Q  185 ctcgtgagcttaactcagttagtaaggataatgtaaaatatatgtaaggt 234  Q
    ||||||||||||||||| || ||||||| |||||| |||||||| |||||    
T  15994 ctcgtgagcttaactcaattggtaaggacaatgtataatatatgcaaggt 15945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University