View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1956_low_24 (Length: 240)

Name: NF1956_low_24
Description: NF1956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1956_low_24
NF1956_low_24
[»] chr4 (9 HSPs)
chr4 (139-223)||(38154073-38154157)
chr4 (139-223)||(41788027-41788111)
chr4 (1-63)||(38154228-38154290)
chr4 (1-63)||(41788188-41788250)
chr4 (1-59)||(41787177-41787235)
chr4 (7-56)||(19693149-19693198)
chr4 (7-56)||(19703734-19703783)
chr4 (80-113)||(38154179-38154212)
chr4 (4-56)||(3066657-3066709)
[»] chr1 (8 HSPs)
chr1 (139-223)||(13099009-13099093)
chr1 (1-59)||(13110565-13110623)
chr1 (7-59)||(25820680-25820732)
chr1 (1-56)||(13099171-13099226)
chr1 (6-59)||(20595990-20596043)
chr1 (80-113)||(20595937-20595970)
chr1 (7-56)||(25820244-25820292)
chr1 (1-41)||(13098159-13098199)
[»] chr2 (4 HSPs)
chr2 (150-223)||(12736771-12736844)
chr2 (7-62)||(7538393-7538448)
chr2 (7-56)||(7537547-7537596)
chr2 (4-49)||(17102446-17102491)
[»] chr8 (6 HSPs)
chr8 (6-62)||(35409846-35409902)
chr8 (7-62)||(31190775-31190830)
chr8 (4-56)||(3340197-3340249)
chr8 (4-56)||(3345504-3345556)
chr8 (6-62)||(35410790-35410846)
chr8 (4-49)||(43658318-43658363)
[»] chr3 (3 HSPs)
chr3 (7-62)||(11961999-11962054)
chr3 (4-56)||(54717978-54718030)
chr3 (7-56)||(11962855-11962904)
[»] scaffold1171 (2 HSPs)
scaffold1171 (9-59)||(954-1004)
scaffold1171 (80-113)||(1022-1055)
[»] chr6 (3 HSPs)
chr6 (7-56)||(21004254-21004303)
chr6 (7-59)||(21003502-21003554)
chr6 (4-56)||(28932080-28932132)
[»] chr7 (2 HSPs)
chr7 (4-56)||(30085752-30085804)
chr7 (4-49)||(10715969-10716014)
[»] scaffold0250 (1 HSPs)
scaffold0250 (4-49)||(21969-22014)


Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 38154157 - 38154073
Alignment:
139 tagaaagcacgtgaactaatacttttctagtcttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgttt 223  Q
    ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38154157 tagaaagcacgtgaagtaatacttttcaagccttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgttt 38154073  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 41788111 - 41788027
Alignment:
139 tagaaagcacgtgaactaatacttttctagtcttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgttt 223  Q
    ||||||||||| |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
41788111 tagaaagcacgcgaactaatgcttttcaagccttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatggtctgttt 41788027  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 38154290 - 38154228
Alignment:
1 acttggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatta 63  Q
    |||||||||||||||| ||||  ||||||||| ||||||||| ||||||||||||||||||||    
38154290 acttggtcgttgctgatgtggcccccacatcctattagtgaaatgccacatgtattattatta 38154228  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 41788250 - 41788188
Alignment:
1 acttggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatta 63  Q
    ||||||||||||||||||||| || ||||||| |||||||| ||||||| |||||||||||||    
41788250 acttggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtattattatta 41788188  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41787177 - 41787235
Alignment:
1 acttggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattatt 59  Q
    ||||||||||||||||||||| |||||||| | |||||||| ||||||| |||||||||    
41787177 acttggtcgttgctgacgtggcacccacattccattagtgaggtgccacgtgtattatt 41787235  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 19693149 - 19693198
Alignment:
7 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 56  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||    
19693149 tcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtatt 19693198  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 19703734 - 19703783
Alignment:
7 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 56  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||    
19703734 tcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtatt 19703783  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 38154212 - 38154179
Alignment:
80 aattcatcctgttatttttaaattgaaataaatt 113  Q
    ||||||||||||||||||||||||||||||||||    
38154212 aattcatcctgttatttttaaattgaaataaatt 38154179  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 3066709 - 3066657
Alignment:
4 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 56  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||| ||||||    
3066709 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtatt 3066657  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 13099093 - 13099009
Alignment:
139 tagaaagcacgtgaactaatacttttctagtcttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgttt 223  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13099093 tagaaagcacgtgaactaatgcttttcaagccttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgttt 13099009  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13110565 - 13110623
Alignment:
1 acttggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattatt 59  Q
    ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||    
13110565 acttggtcgttgctgacgtggcacccacatcccattagtgaggtgccacatgtattatt 13110623  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 25820732 - 25820680
Alignment:
7 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattatt 59  Q
    ||||||||||||||| |||||||||| |||||||||||||||| |||||||||    
25820732 tcgttgctgacgtggcacccacatcccattagtgaagtgccacgtgtattatt 25820680  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 13099226 - 13099171
Alignment:
1 acttggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 56  Q
    ||||||||||||||||||||| |||||||||| |||||||| ||||||| ||||||    
13099226 acttggtcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtatt 13099171  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 20596043 - 20595990
Alignment:
6 gtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattatt 59  Q
    |||||||||||||||| |||||||||| |||||||| ||||||| |||||||||    
20596043 gtcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtattatt 20595990  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 20595970 - 20595937
Alignment:
80 aattcatcctgttatttttaaattgaaataaatt 113  Q
    |||||||||||||||||||||||||||| |||||    
20595970 aattcatcctgttatttttaaattgaaaaaaatt 20595937  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 25820244 - 25820292
Alignment:
7 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 56  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||    
25820244 tcgttgctgacgtggcacccacatcc-attagtgaggtgccacgtgtatt 25820292  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13098159 - 13098199
Alignment:
1 acttggtcgttgctgacgtggaacccacatccgattagtga 41  Q
    ||||||||||||||||||||| |||||||||  ||||||||    
13098159 acttggtcgttgctgacgtggcacccacatctcattagtga 13098199  T

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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 12736844 - 12736771
Alignment:
150 tgaactaatacttttctagtcttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgttt 223  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12736844 tgaactaatgcttttcaagccttcaaagtgcacaacaaggcaatgttactagtatgtttaaacatgatctgttt 12736771  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 7538448 - 7538393
Alignment:
7 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatt 62  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||    
7538448 tcgttgctgacgtggcacccacatcctattagtgaggtgccacgtgtattattatt 7538393  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 7537547 - 7537596
Alignment:
7 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 56  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||    
7537547 tcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtatt 7537596  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 17102491 - 17102446
Alignment:
4 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccac 49  Q
    |||||||||||||||||| || ||||||| |||||||| |||||||    
17102491 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccac 17102446  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 35409846 - 35409902
Alignment:
6 gtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatt 62  Q
    |||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||    
35409846 gtcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtattattatt 35409902  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 31190775 - 31190830
Alignment:
7 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatt 62  Q
    ||||||||||||||| |||||||| | |||||||| ||||||| ||||||||||||    
31190775 tcgttgctgacgtggcacccacattccattagtgacgtgccacgtgtattattatt 31190830  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 3340197 - 3340249
Alignment:
4 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 56  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||| ||||||    
3340197 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtatt 3340249  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 3345556 - 3345504
Alignment:
4 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 56  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||| ||||||    
3345556 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtatt 3345504  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 35410846 - 35410790
Alignment:
6 gtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatt 62  Q
    |||||||||||||||| |||||||| | |||||||| ||| ||| ||||||||||||    
35410846 gtcgttgctgacgtggcacccacatgccattagtgaggtgtcacgtgtattattatt 35410790  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 43658363 - 43658318
Alignment:
4 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccac 49  Q
    |||||||||||||||||| || ||||||| |||||||| |||||||    
43658363 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccac 43658318  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 11961999 - 11962054
Alignment:
7 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattattatt 62  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||    
11961999 tcgttgctgacgtggcacccacatcctattagtgaggtgccacgtgtattattatt 11962054  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 54718030 - 54717978
Alignment:
4 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 56  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||| ||||||    
54718030 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtatt 54717978  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 11962904 - 11962855
Alignment:
7 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 56  Q
    ||||||||||||||| ||||| |||| |||||||| ||||||| ||||||    
11962904 tcgttgctgacgtggcacccatatcccattagtgaggtgccacgtgtatt 11962855  T

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Target: scaffold1171 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 954 - 1004
Alignment:
9 gttgctgacgtggaacccacatccgattagtgaagtgccacatgtattatt 59  Q
    ||||| ||||||| |||||||||| |||||||| |||||||||||||||||    
954 gttgcggacgtggcacccacatcccattagtgaggtgccacatgtattatt 1004  T

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Target: scaffold1171; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 1022 - 1055
Alignment:
80 aattcatcctgttatttttaaattgaaataaatt 113  Q
    |||||||||||||||||||||||||||| |||||    
1022 aattcatcctgttatttttaaattgaaaaaaatt 1055  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 21004303 - 21004254
Alignment:
7 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 56  Q
    ||||||||||||||| |||||||||| |||||||| ||||||| ||||||    
21004303 tcgttgctgacgtggcacccacatcccattagtgaggtgccacgtgtatt 21004254  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 21003502 - 21003554
Alignment:
7 tcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtattatt 59  Q
    ||||||||||||||  |||||||||| |||||||| ||||||| |||||||||    
21003502 tcgttgctgacgtgacacccacatcccattagtgaggtgccacgtgtattatt 21003554  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 28932080 - 28932132
Alignment:
4 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 56  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||| ||||||    
28932080 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtatt 28932132  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 30085752 - 30085804
Alignment:
4 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccacatgtatt 56  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||| ||||||    
30085752 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccacgtgtatt 30085804  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 10715969 - 10716014
Alignment:
4 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccac 49  Q
    |||||||||||||||||| || ||||||| |||||||| |||||||    
10715969 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccac 10716014  T

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Target: scaffold0250 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 21969 - 22014
Alignment:
4 tggtcgttgctgacgtggaacccacatccgattagtgaagtgccac 49  Q
    |||||||||||||||||| || ||||||| |||||||| |||||||    
21969 tggtcgttgctgacgtggcactcacatcccattagtgaggtgccac 22014  T

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