View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19570_high_15 (Length: 275)
Name: NF19570_high_15
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19570_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 1677398 - 1677151
Alignment:
| Q |
11 |
ttatacttaataaaagttctctttgctattnnnnnnnnn-ttaaggtaccacgggcataattttgtcttttgaaatataagtggtgcagcaaataa-gta |
108 |
Q |
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| T |
1677398 |
ttatacttattaaaagttctctttgctattaaaaaaaaaattaaggtaccacgggcataattttgtcttttgaaatataagtggtgcagcaaataatgta |
1677299 |
T |
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| Q |
109 |
tctctgcaactggttcatctcaagtgtttattaggaatgaagaggaaactgagagaggcatttagaagaaaaatgatgagaagtattacaaataatttgg |
208 |
Q |
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| T |
1677298 |
tctctgcaactggttcatctcaagtgtttattaggaatgaagaggaaactgagagaggcatttagaagaaaaatgatgagaagtattacaaataatttgg |
1677199 |
T |
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| Q |
209 |
tttcgaatattggctgcaataataataaagcaacacaccatgccaatg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1677198 |
tttcgaatattggctgcaataataataaagcaacacaccatgccaatg |
1677151 |
T |
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