View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19570_high_9 (Length: 362)

Name: NF19570_high_9
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19570_high_9
NF19570_high_9
[»] chr4 (4 HSPs)
chr4 (12-341)||(2895550-2895877)
chr4 (149-341)||(2888496-2888689)
chr4 (233-340)||(2879029-2879136)
chr4 (18-79)||(2888800-2888861)
[»] chr2 (4 HSPs)
chr2 (247-334)||(44232518-44232605)
chr2 (247-303)||(44209486-44209542)
chr2 (247-331)||(44221700-44221784)
chr2 (267-322)||(43455647-43455702)
[»] chr8 (1 HSPs)
chr8 (247-321)||(4503012-4503086)
[»] chr7 (7 HSPs)
chr7 (250-324)||(39536625-39536699)
chr7 (250-331)||(39545942-39546023)
chr7 (276-331)||(39340171-39340226)
chr7 (276-330)||(1083275-1083329)
chr7 (250-331)||(39562748-39562829)
chr7 (256-309)||(42140732-42140785)
chr7 (275-323)||(39354999-39355047)
[»] chr1 (1 HSPs)
chr1 (247-327)||(2159232-2159312)
[»] chr5 (1 HSPs)
chr5 (87-129)||(30901844-30901886)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 2895550 - 2895877
Alignment:
Q  12 tatactgtattatttaaacacaagttgtaatttttaaccctaagctaaaacaatagaaaatcattgcaaccatgcagtcggagccgtaggcacaattgac 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2895550 tatactgtattatttaaacgcaagttgtaatttttaaccctaagctaaaacaatagaaaatcattgcaaccatgcagtcggagccgtagacacaattgac 2895649  T
Q  112 caaactctgtgatcaaatcttgtgttctttcttagtactaacaatgatcattataggttcacattcctacttagataacatctcatggatataaatactt 211  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2895650 caaactctg--atcaaatcttgtgttctttcttagtactaataatgatcattataggttcacattcctatttagataacatctcatggatataaatactt 2895747  T
Q  212 gtacaaatacttaatttgtaaaaatggtgattttattacctgtgcaaatgcatagggtaaggcagaatacattccagcagctctttctctatagaagaca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2895748 gtacaaatacttaatttgtaaaaatggtgattttattacctgtgcaaatgcatagggtaaggcagaatacattccagcagctctttctctatagaagaca 2895847  T
Q  312 gatctttcaacagctaccacgggttgtaca 341  Q
    ||||||||||||||||||||||||||||||    
T  2895848 gatctttcaacagctaccacgggttgtaca 2895877  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 149 - 341
Target Start/End: Complemental strand, 2888689 - 2888496
Alignment:
Q  149 ctaacaatgatcattataggttcacattcctacttagataacatctc--atggatataaatacttgtacaaa-tacttaatttgtaaaaatggtgatttt 245  Q
    ||||||| |||||| ||||| ||||||||||| |||||| |||||||  ||| |||||||| |||  | ||| |||||| ||  ||||| |  ||||||     
T  2888689 ctaacaaggatcatgataggatcacattcctatttagattacatctcttatgtatataaatgcttaaaaaaaatacttatttcataaaattt-tgattt- 2888592  T
Q  246 attacctgtgcaaatgcatagggtaaggcagaatacattccagcagctctttctctatagaagacagatctttcaacagctaccacgggttgtaca 341  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  2888591 attacctgtgcaaatgcataaggtaaggcagaatacatcccagcagctctttctctatagaacacagatctttcaactgctaccactggttgtaca 2888496  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 233 - 340
Target Start/End: Complemental strand, 2879136 - 2879029
Alignment:
Q  233 aaatggtgattttattacctgtgcaaatgcatagggtaaggcagaatacattccagcagctctttctctatagaagacagatctttcaacagctaccacg 332  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||     
T  2879136 aaatagtgattttattacctgtgcaagtgcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactact 2879037  T
Q  333 ggttgtac 340  Q
    ||||||||    
T  2879036 ggttgtac 2879029  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 2888861 - 2888800
Alignment:
Q  18 gtattatttaaacacaagttgtaatttttaaccctaagctaaaacaatagaaaatcattgca 79  Q
    ||||||||||||||||||||||||| | |||| |||||||  || |||||||||||||||||    
T  2888861 gtattatttaaacacaagttgtaatctgtaactctaagcttgaataatagaaaatcattgca 2888800  T

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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 334
Target Start/End: Original strand, 44232518 - 44232605
Alignment:
Q  247 ttacctgtgcaaatgcatagggtaaggcagaatacattccagcagctctttctctatagaagacagatctttcaacagctaccacggg 334  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| || |||| |||||| || || ||||||||    
T  44232518 ttacctgtgaaaatgcatagggtaaggcagagtacattccagcagctttttctctataaaatacagttctttccactgcaaccacggg 44232605  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 44209486 - 44209542
Alignment:
Q  247 ttacctgtgcaaatgcatagggtaaggcagaatacattccagcagctctttctctat 303  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  44209486 ttacctgtgaaaatgcatagggtaaggcagagtacattccagcagctttttctctat 44209542  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 331
Target Start/End: Original strand, 44221700 - 44221784
Alignment:
Q  247 ttacctgtgcaaatgcatagggtaaggcagaatacattccagcagctctttctctatagaagacagatctttcaacagctaccac 331  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||  |||||| ||| || ||||  |||||||| || |||||    
T  44221700 ttacctgtgaaaatgcatatggtaaggcagaatacattccagcagccttttctcgataaaatacagtcctttcaactgcaaccac 44221784  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 43455647 - 43455702
Alignment:
Q  267 ggtaaggcagaatacattccagcagctctttctctatagaagacagatctttcaac 322  Q
    ||||| |||||||||||||||||||||||||||| |||||| |||| |||||||||    
T  43455647 ggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttcaac 43455702  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 4503086 - 4503012
Alignment:
Q  247 ttacctgtgcaaatgcatagggtaaggcagaatacattccagcagctctttctctatagaagacagatctttcaa 321  Q
    |||||||||| || ||||| || || | || |||||||||||||||||||||||||||||| || | ||||||||    
T  4503086 ttacctgtgctaaggcataaggcaaaggagcatacattccagcagctctttctctatagaacactgttctttcaa 4503012  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 39536625 - 39536699
Alignment:
Q  250 cctgtgcaaatgcatagggtaaggcagaatacattccagcagctctttctctatagaagacagatctttcaacag 324  Q
    |||| ||||| ||||| || || || |||||||||||||| |||||||||||||| ||||| | |||||||||||    
T  39536625 cctgagcaaaagcatacggcaaagctgaatacattccagccgctctttctctataaaagactgttctttcaacag 39536699  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 39545942 - 39546023
Alignment:
Q  250 cctgtgcaaatgcatagggtaaggcagaatacattccagcagctctttctctatagaagacagatctttcaacagctaccac 331  Q
    |||| ||||| ||||| || || || ||||||||||| || |||||||||| ||| ||||| | ||||||||||||||||||    
T  39545942 cctgagcaaaagcatatggaaaagctgaatacattccggctgctctttctcgataaaagaccgttctttcaacagctaccac 39546023  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 39340226 - 39340171
Alignment:
Q  276 gaatacattccagcagctctttctctatagaagacagatctttcaacagctaccac 331  Q
    ||||||||||| || |||||||||||||| ||||| | |||||||||||| |||||    
T  39340226 gaatacattccggccgctctttctctataaaagaccgttctttcaacagcaaccac 39340171  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 1083275 - 1083329
Alignment:
Q  276 gaatacattccagcagctctttctctatagaagacagatctttcaacagctacca 330  Q
    ||||||||||| || |||||||||||||| ||||| | |||||||||||| ||||    
T  1083275 gaatacattccggctgctctttctctataaaagacggttctttcaacagcaacca 1083329  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 39562748 - 39562829
Alignment:
Q  250 cctgtgcaaatgcatagggtaaggcagaatacattccagcagctctttctctatagaagacagatctttcaacagctaccac 331  Q
    |||| ||||| ||||| || || || ||||||||||| || |||||||||||||| ||||| | |||||| ||||| |||||    
T  39562748 cctgagcaaaagcatatggaaaagctgaatacattccggctgctctttctctataaaagaccgttctttcgacagcaaccac 39562829  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 42140732 - 42140785
Alignment:
Q  256 caaatgcatagggtaaggcagaatacattccagcagctctttctctatagaaga 309  Q
    |||||||||| ||||| |||||||||||||| || |||||||| | ||||||||    
T  42140732 caaatgcataaggtaatgcagaatacattcctgctgctctttcccgatagaaga 42140785  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 39355047 - 39354999
Alignment:
Q  275 agaatacattccagcagctctttctctatagaagacagatctttcaaca 323  Q
    |||||||||||| || |||||||||||||| ||||| | ||||||||||    
T  39355047 agaatacattccggctgctctttctctataaaagaccgttctttcaaca 39354999  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 327
Target Start/End: Original strand, 2159232 - 2159312
Alignment:
Q  247 ttacctgtgcaaatgcatagggtaaggcagaatacattccagcagctctttctctatagaagacagatctttcaacagcta 327  Q
    ||||||||||   |||||| || || || |||||||||||||||||||||||||| |||||||| | ||| ||||| ||||    
T  2159232 ttacctgtgctgctgcataaggcaaagcggaatacattccagcagctctttctctgtagaagactgttctctcaactgcta 2159312  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 30901844 - 30901886
Alignment:
Q  87 agtcggagccgtaggcacaattgaccaaactctgtgatcaaat 129  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||    
T  30901844 agtcggagacgtagacacaattgaccgaactctgtgatcaaat 30901886  T

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