View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19570_low_10 (Length: 362)
Name: NF19570_low_10
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19570_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 49056505 - 49056845
Alignment:
| Q |
18 |
tgcatattcaaaataaaacaagtatactttttgacaatttaaatgaggcaaaagtacaactttgataaacaaacatttttagaaagggtgagagatgaaa |
117 |
Q |
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| T |
49056505 |
tgcatattcaaaataaaacaagtatactttttgacaatttaaatgaggcaaaagtacaactttgataaacaaacatttttagaaagggtgacagatgaaa |
49056604 |
T |
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| Q |
118 |
aatgtctccttcaaacnnnnnnnnnnnngaacaatatatatctttaaacttaacgatcaagaaaagtaccacatttagcattgaggttattctaggtcgg |
217 |
Q |
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| T |
49056605 |
aatgtcaccttcaaactttttttttttttaacaatatatatctttaaacttaacgaa----aaaagtaccacatttagcattgaggctattttaggtcgg |
49056700 |
T |
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| Q |
218 |
acaatgaactgagtcaactcgaacatattttgaaattcgataatgaactcgttgaacttagattcatgaatcaattgaactaaaaattaagttagttaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
49056701 |
acaatgaactgagtcaactcgaacatattttgaaattcaataattaattcgttgaacttagattcatgaatcaattgaactgaaaattaaattagttaac |
49056800 |
T |
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| Q |
318 |
taaatgagtcaaattaagtaacgtgtaagatttactccctatgat |
362 |
Q |
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| T |
49056801 |
taaatgagtcaaattaagtatcgtgtaagacttactcccaatgat |
49056845 |
T |
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