View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19570_low_12 (Length: 329)
Name: NF19570_low_12
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19570_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 4 - 269
Target Start/End: Complemental strand, 32668818 - 32668553
Alignment:
| Q |
4 |
attttattagaacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaagtatctaa |
103 |
Q |
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| T |
32668818 |
attttattagaacgattcgacctacaatgggcaattgtttattcttccacttcaacaatgttgatctgacagcctcaatcactggatgccaagtatctaa |
32668719 |
T |
|
| Q |
104 |
tatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctctcccacccacctctcg |
203 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32668718 |
tatcctcagatttgctctgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctctcccacccacctctgg |
32668619 |
T |
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| Q |
204 |
aatatattgactccgactaataaacttttatgaaagttcactcacagacccgatattacctcaaat |
269 |
Q |
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| T |
32668618 |
gatatattgactccgactaataaacttttatgaaagttcactcatagacccgatattacctcaaat |
32668553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 32664373 - 32664327
Alignment:
| Q |
267 |
aatagaagcaaatttaccttgatgattatgatatttgaccacttttt |
313 |
Q |
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| T |
32664373 |
aatagaagcaaatttaccttgatgattctgatatttgaccacttttt |
32664327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 23703138 - 23703451
Alignment:
| Q |
1 |
ctgattttattagaacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaagtatc |
100 |
Q |
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| T |
23703138 |
ctgattttattagaatgactctacctccaatgcacaaatgattattcttccacttcaacaatcttgatctcctagcctcaatcactagttgctatgtatc |
23703237 |
T |
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| Q |
101 |
taatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctctcccacccacctc |
200 |
Q |
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|||| |||| |||||||| || ||||||||||| |||||||| |||||| ||| ||||||||| |||| || ||||| |||||| ||||||| || |
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| T |
23703238 |
taatctcctaggatttgctccaataggtaaaccaagatacttaaatagagtacatcatattttacaatttaggactttagctgcctcttccacccatctt |
23703337 |
T |
|
| Q |
201 |
tcgaatatattgactccgactaataaacttttatgaaagttcactcacagacccgatattacctcaaatagaagcaaatttaccttgatgattatgatat |
300 |
Q |
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| T |
23703338 |
tgtgatatattgactcccaccaatgaacttttatgaaagttgacttttagaccaaacattacttcaaaaagaagtaaatttgcctttttaattttgatat |
23703437 |
T |
|
| Q |
301 |
ttgaccactttttt |
314 |
Q |
| |
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| T |
23703438 |
tcaaccactttttt |
23703451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 39294408 - 39294239
Alignment:
| Q |
2 |
tgattttattagaacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaagtatct |
101 |
Q |
| |
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||||||||||| ||||| | ||||| |||| | || |||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||| | |
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| T |
39294408 |
tgattttattaaaacgactagaccttcaatagacagttgtttattcttccactttgacaatcttgacctcactgcctcaatcactggatgccaagtattt |
39294309 |
T |
|
| Q |
102 |
aatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacatttta |
171 |
Q |
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| |||| || || ||||| |||||||||||||| |||||||||| ||| ||||||||||||| |||| |
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| T |
39294308 |
attatcgtcggacttgctccgattggtaaaccaatgtacttaaacatagtggatcctattttacaattta |
39294239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 22639055 - 22639143
Alignment:
| Q |
14 |
aacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaagtatcta |
102 |
Q |
| |
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||||| ||||||| |||| ||| ||||||||||||||||| ||||||||||||| | |||| ||||||| | ||||| ||||||| |
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| T |
22639055 |
aacgaattgacctcaaatgaacaagtgtttattcttccacttagacaatcttgatcctagtgccttaatcactagctgccatgtatcta |
22639143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 29122143 - 29122255
Alignment:
| Q |
89 |
atgccaagtatctaatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctct |
188 |
Q |
| |
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|||||| ||||||||| || || |||||||| || ||||||||||| ||||||||| || || || || ||||| ||||| | ||||||||||||| |
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| T |
29122143 |
atgccatgtatctaatctcttcggatttgctccaatcggtaaaccaaggtacttaaacggaaagaaaccaatcttacaatttaaaatattagccgcctct |
29122242 |
T |
|
| Q |
189 |
cccacccacctct |
201 |
Q |
| |
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||| |||||||| |
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|
| T |
29122243 |
tccaaccacctct |
29122255 |
T |
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