View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19570_low_14 (Length: 290)
Name: NF19570_low_14
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19570_low_14 |
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| [»] chr8 (7 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 15128909 - 15128637
Alignment:
| Q |
18 |
gatagtactaggaaataaaagcgcgaagaagaataaggaattaacataccataagatagaaccatgaccatgtcactgtctattacagttggaactctgt |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15128909 |
gatagtactaggtaataaaagcgcgaagaagaataaggaattaacataccataagatagaaccatgaccatgtcactgtctattacagttggaactctgt |
15128810 |
T |
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| Q |
118 |
gagcaacagttataactgtgcattcttcaaattcttgtctaattattctttgtagaatcgcatctgtggctgaatcaatggatgcagtagcttcatccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15128809 |
gagcaacagttataactgtgcattcttcaaattcttgtctaattattctttgtagaatcgcatctgtggctgaatcaatggatgcagtagcttcatccaa |
15128710 |
T |
|
| Q |
218 |
aacaagaattctgttccttttaagtagaactcttccgaggcaaaataattggcgttgtcccaagctccaattt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15128709 |
aacaagaattctgttccttttaagtagaactcttccgaggcaaaataattggcgttgtcccaagctccaattt |
15128637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 14946173 - 14946443
Alignment:
| Q |
18 |
gatagtactaggaaataaaagcgcgaagaagaataaggaattaacataccataagatagaaccatgaccatgtcactgtctattacagttggaactctgt |
117 |
Q |
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|||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14946173 |
gatattactaggaaataaaagca--aagaataataaggaattaacataccataagataggaccatgaccatgtcactgtctattacagttggaactctgt |
14946270 |
T |
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| Q |
118 |
gagcaacagttataactgtgcattcttcaaattcttgtctaattattctttgtagaatcgcatctgtggctgaatcaatggatgcagtagcttcatccaa |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14946271 |
gagcaacagttataactgtgcattcttcaaactcttgtctgattattctttgtagaatggcatctgtggctgaatcaatggatgcagtagcttcgtccaa |
14946370 |
T |
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| Q |
218 |
aacaagaattctgttccttttaagtagaactcttccgaggcaaaataattggcgttgtcccaagctccaattt |
290 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14946371 |
aacaagaattttgttcctcttaagtagaactcttccgaggcaaaacaattggcgttgtcccaagctccaattt |
14946443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 44 - 290
Target Start/End: Original strand, 5286923 - 5287169
Alignment:
| Q |
44 |
agaagaataaggaattaacataccataagatagaaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattct |
143 |
Q |
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|||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5286923 |
agaagattaaggaaataacataccataagataggaccatgaccatgtcactgtctattacagttggaactctgtgagccacagttataactgtgcattct |
5287022 |
T |
|
| Q |
144 |
tcaaattcttgtctaattattctttgtagaatcgcatctgtggctgaatcaatggatgcagtagcttcatccaaaacaagaattctgttccttttaagta |
243 |
Q |
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||||||||||||||||| |||||||||||| ||||| || || || ||||||||||| || |||||||||| ||||||||||||||| || ||||||| |
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| T |
5287023 |
gaaaattcttgtctaattactctttgtagaattgcatccgtcgcagagtcaatggatgctgttgcttcatccagaacaagaattctgtttctcttaagta |
5287122 |
T |
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| Q |
244 |
gaactcttccgaggcaaaataattggcgttgtcccaagctccaattt |
290 |
Q |
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|||||||||| |||||||| ||||| | ||||||||||||||||||| |
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| T |
5287123 |
gaactcttccaaggcaaaacaattgcctttgtcccaagctccaattt |
5287169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 44 - 290
Target Start/End: Complemental strand, 5310251 - 5310005
Alignment:
| Q |
44 |
agaagaataaggaattaacataccataagatagaaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattct |
143 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |
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| T |
5310251 |
agaagaataaggaaataacataccataagataggaccatgaccatgtcactgtctatgacagttggaactctgtgagccacagttatgactgtgcattct |
5310152 |
T |
|
| Q |
144 |
tcaaattcttgtctaattattctttgtagaatcgcatctgtggctgaatcaatggatgcagtagcttcatccaaaacaagaattctgttccttttaagta |
243 |
Q |
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|||||||||||||||||| ||||||||| || |||||||||| || ||||| || |||||||||||||||| |||||||||| |||| || ||||||| |
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| T |
5310151 |
gcaaattcttgtctaattactctttgtagtattgcatctgtggaagagtcaatagaggcagtagcttcatccagaacaagaattttgtttctcttaagta |
5310052 |
T |
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| Q |
244 |
gaactcttccgaggcaaaataattggcgttgtcccaagctccaattt |
290 |
Q |
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|||||||||| || ||||| ||||| | ||||| ||||||||||||| |
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| T |
5310051 |
gaactcttccaagacaaaacaattgcctttgtctcaagctccaattt |
5310005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 45 - 290
Target Start/End: Original strand, 5279197 - 5279442
Alignment:
| Q |
45 |
gaagaataaggaattaacataccataagatagaaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattctt |
144 |
Q |
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|
|||||||||||| | | |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5279197 |
gaagaataaggattaagcataccataagataagaccagaaccatgtcactgtctattacagttggaactctgtgagccacagttataactgtgcattctt |
5279296 |
T |
|
| Q |
145 |
caaattcttgtctaattattctttgtagaatcgcatctgtggctgaatcaatggatgcagtagcttcatccaaaacaagaattctgttccttttaagtag |
244 |
Q |
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| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| || |||||||| | |||||||||||| || ||||||||||| |
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| T |
5279297 |
cgaattcttgtctaattactctttgtagaattgcatctgtggctgagtcaatggatgctgttgcttcatctagaacaagaattctatttcttttaagtag |
5279396 |
T |
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| Q |
245 |
aactcttccgaggcaaaataattggcgttgtcccaagctccaattt |
290 |
Q |
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||||||||| |||||||| | ||| || ||||| |||||||||||| |
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| T |
5279397 |
aactcttccaaggcaaaacagttgccgctgtcctaagctccaattt |
5279442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 45 - 290
Target Start/End: Complemental strand, 5316898 - 5316653
Alignment:
| Q |
45 |
gaagaataaggaattaacataccataagatagaaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattctt |
144 |
Q |
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|||||||||||| | | |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||| |
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| T |
5316898 |
gaagaataaggattaagcataccataagataagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctg |
5316799 |
T |
|
| Q |
145 |
caaattcttgtctaattattctttgtagaatcgcatctgtggctgaatcaatggatgcagtagcttcatccaaaacaagaattctgttccttttaagtag |
244 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||| || |||||||| |||||||||||||||| ||| ||||| |||||||| |||||||| |
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| T |
5316798 |
aaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtag |
5316699 |
T |
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| Q |
245 |
aactcttccgaggcaaaataattggcgttgtcccaagctccaattt |
290 |
Q |
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||||||||| || ||||| ||||| | ||||||||||||||||||| |
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| T |
5316698 |
aactcttccaagacaaaacaattgcctttgtcccaagctccaattt |
5316653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 64 - 290
Target Start/End: Original strand, 5347901 - 5348127
Alignment:
| Q |
64 |
taccataagatagaaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattcttcaaattcttgtctaattat |
163 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5347901 |
taccataagaaagaaccatgaccatatcactgtcaataacagttggaactctatgagctacagttataactgtgcattctgcaaattcttgtctaattat |
5348000 |
T |
|
| Q |
164 |
tctttgtagaatcgcatctgtggctgaatcaatggatgcagtagcttcatccaaaacaagaattctgttccttttaagtagaactcttccgaggcaaaat |
263 |
Q |
| |
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| |||||||||| ||||||||||| |||||||| || |||||||||||||||||||| |||||| | || |||||||| || |||||||| |||||||| |
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| T |
5348001 |
tttttgtagaatagcatctgtggcagaatcaatagaggcagtagcttcatccaaaactagaattttatttcttttaagaaggactcttccaaggcaaaac |
5348100 |
T |
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| Q |
264 |
aattggcgttgtcccaagctccaattt |
290 |
Q |
| |
|
||||| | ||| |||| |||||||||| |
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| T |
5348101 |
aattgtctttggcccatgctccaattt |
5348127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 46 - 290
Target Start/End: Original strand, 31523367 - 31523611
Alignment:
| Q |
46 |
aagaataaggaattaacataccataagatagaaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattcttc |
145 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||| | |
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| T |
31523367 |
aagaataaggaatcaacataccataagataggatcatgaccatgtcactgtctattacagttggaattctgtgagcaatggttattacagtgcattctgc |
31523466 |
T |
|
| Q |
146 |
aaattcttgtctaattattctttgtagaatcgcatctgtggctgaatcaatggatgcagtagcttcatccaaaacaagaattctgttccttttaagtaga |
245 |
Q |
| |
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||||||||||||||||| |||||||||||| ||||||||||| || |||||||| || ||||||||||| | ||| | |||| ||||||| || ||||| |
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| T |
31523467 |
aaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggctgtagcttcatctagaactaaaattttgttcctcttgagtagt |
31523566 |
T |
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| Q |
246 |
actcttccgaggcaaaataattggcgttgtcccaagctccaattt |
290 |
Q |
| |
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|||||||| || ||||| | |||||| || || |||||||||||| |
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| T |
31523567 |
actcttccaagacaaaacagttggcgctgccctaagctccaattt |
31523611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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