View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19570_low_19 (Length: 250)

Name: NF19570_low_19
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19570_low_19
NF19570_low_19
[»] chr1 (3 HSPs)
chr1 (1-173)||(46910480-46910652)
chr1 (131-172)||(42843262-42843303)
chr1 (136-173)||(50777346-50777383)
[»] chr8 (1 HSPs)
chr8 (133-172)||(2597080-2597119)
[»] chr7 (4 HSPs)
chr7 (131-170)||(42942297-42942336)
chr7 (133-170)||(8742497-8742534)
chr7 (136-172)||(25614744-25614780)
chr7 (112-172)||(38990213-38990273)
[»] chr6 (2 HSPs)
chr6 (133-172)||(1803981-1804020)
chr6 (136-173)||(6435147-6435184)
[»] chr3 (2 HSPs)
chr3 (133-172)||(54233421-54233460)
chr3 (133-173)||(35756091-35756131)
[»] chr2 (5 HSPs)
chr2 (133-172)||(36582368-36582407)
chr2 (133-172)||(38572051-38572090)
chr2 (131-170)||(42141528-42141567)
chr2 (131-172)||(12192059-12192100)
chr2 (133-173)||(33030022-33030062)
[»] chr4 (1 HSPs)
chr4 (133-171)||(15638243-15638281)
[»] chr5 (1 HSPs)
chr5 (131-172)||(10522887-10522928)
[»] scaffold0049 (1 HSPs)
scaffold0049 (133-173)||(72091-72131)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 46910652 - 46910480
Alignment:
Q  1 ttatactacacatatgaagacaaaaggnnnnnnnttcttcattattaatccttcctaataaacaatactccttttattctttcttaatcgttatctctca 100  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||     
T  46910652 ttatactacacatatgaagacaaaaggaaaaaaattcttcattattaatccttcctaataaacaatactccatttattctttattaatcgttatctctcg 46910553  T
Q  101 ttataccatcttgagcaatgatatttgcacataactttggtgacaaccgtgtttttctctattcttattggtt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  46910552 ttataccatcttgagcaatgatatttgcacataactttggtgacaaccgtggttttttctattcttattggtt 46910480  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 42843262 - 42843303
Alignment:
Q  131 ataactttggtgacaaccgtgtttttctctattcttattggt 172  Q
    |||| ||||||||||||| ||||||||||| |||||||||||    
T  42843262 ataattttggtgacaaccttgtttttctctcttcttattggt 42843303  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 50777346 - 50777383
Alignment:
Q  136 tttggtgacaaccgtgtttttctctattcttattggtt 173  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  50777346 tttggtgacaaccttgtttttctctcttcttattggtt 50777383  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 2597080 - 2597119
Alignment:
Q  133 aactttggtgacaaccgtgtttttctctattcttattggt 172  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  2597080 aactttggtgacaaccttgtttttctctcttcttattggt 2597119  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 42942297 - 42942336
Alignment:
Q  131 ataactttggtgacaaccgtgtttttctctattcttattg 170  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  42942297 ataattttggtgacaaccttgtttttctctattcttattg 42942336  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 8742534 - 8742497
Alignment:
Q  133 aactttggtgacaaccgtgtttttctctattcttattg 170  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  8742534 aactttggtgacaaccttgtttttctctcttcttattg 8742497  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 25614744 - 25614780
Alignment:
Q  136 tttggtgacaaccgtgtttttctctattcttattggt 172  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  25614744 tttggtgacaaccttgtttttctctcttcttattggt 25614780  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 38990273 - 38990213
Alignment:
Q  112 tgagcaatgatatttgcacataactttggtgacaaccgtgtttttctctattcttattggt 172  Q
    |||| ||||||||||| ||||   |||| |||||||| |||||||||||||| ||||||||    
T  38990273 tgaggaatgatatttggacatccatttgatgacaaccttgtttttctctatttttattggt 38990213  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 1804020 - 1803981
Alignment:
Q  133 aactttggtgacaaccgtgtttttctctattcttattggt 172  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  1804020 aactttggtgacaaccttgtttttctctcttcttattggt 1803981  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 6435184 - 6435147
Alignment:
Q  136 tttggtgacaaccgtgtttttctctattcttattggtt 173  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  6435184 tttggtgacaaccttgtttttctctcttcttattggtt 6435147  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 54233421 - 54233460
Alignment:
Q  133 aactttggtgacaaccgtgtttttctctattcttattggt 172  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  54233421 aactttggtgacaaccttgtttttctctcttcttattggt 54233460  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 35756131 - 35756091
Alignment:
Q  133 aactttggtgacaaccgtgtttttctctattcttattggtt 173  Q
    |||||||||||||||  ||||||||||| ||||||||||||    
T  35756131 aactttggtgacaactttgtttttctctcttcttattggtt 35756091  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 36582407 - 36582368
Alignment:
Q  133 aactttggtgacaaccgtgtttttctctattcttattggt 172  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  36582407 aactttggtgacaaccttgtttttctctattctaattggt 36582368  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 38572090 - 38572051
Alignment:
Q  133 aactttggtgacaaccgtgtttttctctattcttattggt 172  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  38572090 aactttggtgacaaccttgtttttctctcttcttattggt 38572051  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 42141528 - 42141567
Alignment:
Q  131 ataactttggtgacaaccgtgtttttctctattcttattg 170  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  42141528 ataactttgttgacaaccttgtttttctctattcttattg 42141567  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 12192100 - 12192059
Alignment:
Q  131 ataactttggtgacaaccgtgtttttctctattcttattggt 172  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  12192100 ataactttggtgacaaccttgcttttctctatttttattggt 12192059  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 33030022 - 33030062
Alignment:
Q  133 aactttggtgacaaccgtgtttttctctattcttattggtt 173  Q
    ||||||| |||||||| |||||||||||||| |||||||||    
T  33030022 aactttgatgacaaccttgtttttctctatttttattggtt 33030062  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 15638281 - 15638243
Alignment:
Q  133 aactttggtgacaaccgtgtttttctctattcttattgg 171  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  15638281 aactttggtgacaaccttgtttttctctcttcttattgg 15638243  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 10522928 - 10522887
Alignment:
Q  131 ataactttggtgacaaccgtgtttttctctattcttattggt 172  Q
    |||||||| ||||||||| ||||||||||| |||||||||||    
T  10522928 ataactttagtgacaaccttgtttttctctcttcttattggt 10522887  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 72091 - 72131
Alignment:
Q  133 aactttggtgacaaccgtgtttttctctattcttattggtt 173  Q
    |||||||||||||||| || ||||||| |||||||||||||    
T  72091 aactttggtgacaaccttggttttctcaattcttattggtt 72131  T

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