View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19570_low_2 (Length: 740)

Name: NF19570_low_2
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19570_low_2
NF19570_low_2
[»] chr7 (2 HSPs)
chr7 (22-724)||(41874105-41874799)
chr7 (300-405)||(9555080-9555186)
[»] chr1 (5 HSPs)
chr1 (475-628)||(28561611-28561764)
chr1 (286-459)||(33008437-33008612)
chr1 (473-548)||(33008677-33008752)
chr1 (274-342)||(24056220-24056289)
chr1 (362-396)||(18474065-18474099)
[»] chr3 (3 HSPs)
chr3 (273-342)||(9104173-9104243)
chr3 (300-342)||(16972009-16972051)
chr3 (267-363)||(16475271-16475368)
[»] chr6 (2 HSPs)
chr6 (295-344)||(11166591-11166640)
chr6 (267-363)||(25005137-25005234)
[»] chr2 (3 HSPs)
chr2 (254-342)||(23828304-23828393)
chr2 (275-340)||(11387177-11387243)
chr2 (285-342)||(44788527-44788584)
[»] chr8 (2 HSPs)
chr8 (284-342)||(40841586-40841644)
chr8 (295-344)||(10250412-10250461)
[»] chr5 (1 HSPs)
chr5 (295-336)||(27026643-27026684)


Alignment Details
Target: chr7 (Bit Score: 577; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 22 - 724
Target Start/End: Original strand, 41874105 - 41874799
Alignment:
Q  22 ttacatggagacaaggtactaaatatttccatgattttggcttaagctattaaattaaattactcccttttaaagtagtgtacgagtaccacttctcttg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41874105 ttacatggagacaaggtactaaatatttccatgattttggcttaagctattaaattaaattactcccttttaaagtagtgtacgagtaccacttctcttg 41874204  T
Q  122 tcaaaaaaaacataaaacttctattctcaacnnnnnnnnnnnggagtatcatatatataaccctcttactgtacgtaatactgtccgtacaatcttcttc 221  Q
    ||||||||| |||||||||||||||||||||           |||||||||||||||  ||||||||||||||    || ||||||||||||||||||||    
T  41874205 tcaaaaaaa-cataaaacttctattctcaaccaaaaaaaaa-ggagtatcatatata--accctcttactgta----attctgtccgtacaatcttcttc 41874296  T
Q  222 cttgtaagatatttcgtgggaatttggaatttgctaggaaggagagtgtttaaggtaagagttttttctcattcgtttttactaagtgttaggatcgtgt 321  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||    
T  41874297 cttgtaagatatttcgtgggaatttagaatttgctaggaaggaaagtgtttaggataagagttttttctcattcgttcttactaagtgttaggatcgtgt 41874396  T
Q  322 tatgaaatagtggtagaaattttcatccgttgaaaagaacaagaaaaacaattaaaatatatatttaagtggtaaagtttgaatttttatatttatatat 421  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41874397 tatgaaatagtggtagaaattttcatcggttgaaaagaacaagaaaaacaactaaaatatatatttaagtggtaaagtttgaatttttatatttatatat 41874496  T
Q  422 gaaaacatgatttgaattgatgtgtgtaatgaaagttttggtttcttatattgtgtgtaaatgatgatattaattctatgttatttgtgattatactttg 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41874497 gaaaacatgatttgaattgatgtgtgtaatgaaagttttggtttcttattttgtgtgtaaatgatgatattaattctatgttatttgtgattatagtttg 41874596  T
Q  522 aatttttattatgtctgaaagcaatgaaatgagttttgagaatgcaaattttgttcttgtatgtgggttttctctttgttttcctaagtgccggttattt 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41874597 aatttttattatgtctgaaagcaatgaaatgagttttgagaatgcaaattttgttcttgtatgtgagttttctctttgttttcctaagtgccggttattt 41874696  T
Q  622 tatttgattgtgtttgcctaagtggcggaaattatatttttactatcatcatgcatttcctatgtgatgccttattggcggacaaatctcttttcatcat 721  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41874697 tatttgattgtggttgcctaagtggcagaaattatatttttactatcatcatgcatttcctatgtgatgccttattggcggacaaatctcttttcatcat 41874796  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 300 - 405
Target Start/End: Complemental strand, 9555186 - 9555080
Alignment:
Q  300 ttactaagtgttaggatcgtgttatgaaatagtggtagaaattttcatccgttgaaaagaacaagaaaaacaattaaaatatatatttaagtg-gtaaag 398  Q
    |||||||||| |||||   | ||||||||||||||| |||||| | ||| ||| ||||||| |||||||||||||||| ||||||||||||||  |||||    
T  9555186 ttactaagtgctaggactctcttatgaaatagtggttgaaattctaatcggttaaaaagaaaaagaaaaacaattaaattatatatttaagtgattaaag 9555087  T
Q  399 tttgaat 405  Q
    |||||||    
T  9555086 tttgaat 9555080  T

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Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 475 - 628
Target Start/End: Original strand, 28561611 - 28561764
Alignment:
Q  475 tgtgtaaatgatgatattaattctatgttatttgtgattatactttgaatttttattatgtctgaaagcaatgaaatgagttttgagaatgcaaattttg 574  Q
    |||||| ||||||| || ||||||||||||||| |||||| | |||||||| ||| ||||||||||||||| ||  || ||||||||||||||| || ||    
T  28561611 tgtgtacatgatgacataaattctatgttatttctgattaaattttgaattgttaatatgtctgaaagcaacgatgtgggttttgagaatgcaagttctg 28561710  T
Q  575 ttcttgtatgtgggttttctctttgttttcctaagtgccggttattttatttga 628  Q
    || |||||| | | ||| |||||||||| ||||||||  || || |||||||||    
T  28561711 ttattgtatattgatttactctttgtttgcctaagtggtggctactttatttga 28561764  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 286 - 459
Target Start/End: Original strand, 33008437 - 33008612
Alignment:
Q  286 tttctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaattttcatccgttgaaaagaacaagaaaaacaattaaaatatatat 385  Q
    |||| ||| |||| ||||||||||  |||| | ||||||||||| |||||||||||| | |||  || ||||||  |  ||| | |||||||||||||||    
T  33008437 tttcccatacgttcttactaagtgccaggaccatgttatgaaatggtggtagaaattctaatcgtttaaaaagagaagtaaatataattaaaatatatat 33008536  T
Q  386 ttaagtggtaaag-tttgaatttttata-tttatatatgaaaacatgatttgaattgatgtgtgtaatgaaagttt 459  Q
    | |||| |||||| ||||||||| || | |||||||||||  |||| ||||||| |||||||| ||||||| ||||    
T  33008537 taaagttgtaaagatttgaatttataaagtttatatatgaggacataatttgaagtgatgtgtataatgaatgttt 33008612  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 473 - 548
Target Start/End: Original strand, 33008677 - 33008752
Alignment:
Q  473 tgtgtgtaaatgatgatattaattctatgttatttgtgattatactttgaatttttattatgtctgaaagcaatga 548  Q
    |||||||| |||||||| | |||| |||||||||||||||||   ||||||| |||| |||||||||||| |||||    
T  33008677 tgtgtgtacatgatgatgtgaattttatgttatttgtgattaatgtttgaatctttaatatgtctgaaagtaatga 33008752  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 24056289 - 24056220
Alignment:
Q  274 aggtaagagttttttctc-attcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatt 342  Q
    |||||||||||||||||| || |||| ||||||| || ||||| | ||||| ||||||||||||||||||    
T  24056289 aggtaagagttttttctccatacgttcttactaaatgctaggaccttgttacgaaatagtggtagaaatt 24056220  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 362 - 396
Target Start/End: Complemental strand, 18474099 - 18474065
Alignment:
Q  362 aagaaaaacaattaaaatatatatttaagtggtaa 396  Q
    ||||||||||||||||||||||||||| |||||||    
T  18474099 aagaaaaacaattaaaatatatatttaggtggtaa 18474065  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 9104173 - 9104243
Alignment:
Q  273 aaggtaagagttttttctc-attcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatt 342  Q
    |||||||| |||||||| | || |||||||||||||||||||||  ||||||| |||||||||||| ||||    
T  9104173 aaggtaagggttttttccccatacgtttttactaagtgttaggactgtgttattaaatagtggtagcaatt 9104243  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 16972009 - 16972051
Alignment:
Q  300 ttactaagtgttaggatcgtgttatgaaatagtggtagaaatt 342  Q
    ||||||||||||||||  ||||||||||||||| |||||||||    
T  16972009 ttactaagtgttaggacggtgttatgaaatagtagtagaaatt 16972051  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 363
Target Start/End: Original strand, 16475271 - 16475368
Alignment:
Q  267 gtgtttaaggtaagagtttttt-ctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaattttcatccgttgaaaagaacaa 363  Q
    |||||||||||||||||||||| | ||| |||| |||||||||  || |||  ||||||||| ||| |||||| ||| |  || ||||||||||||||    
T  16475271 gtgtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaa 16475368  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 11166640 - 11166591
Alignment:
Q  295 cgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatttt 344  Q
    |||| |||||||||||||||||| | |||||||||||||||||| |||||    
T  11166640 cgttcttactaagtgttaggatcttattatgaaatagtggtagagatttt 11166591  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 363
Target Start/End: Original strand, 25005137 - 25005234
Alignment:
Q  267 gtgtttaaggtaagagtttttt-ctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaattttcatccgttgaaaagaacaa 363  Q
    |||||||||||||||||||||| | ||| |||| |||||||||  || |||  ||||||||| ||| |||||| ||| |  || ||||||||||||||    
T  25005137 gtgtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaa 25005234  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 254 - 342
Target Start/End: Complemental strand, 23828393 - 23828304
Alignment:
Q  254 gctaggaaggagagtgtttaaggtaag-agttttttctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatt 342  Q
    ||||||||| | || || ||||||||| | ||||||| ||  |||| ||||||||||||||||   ||||||||||||||||||||||||    
T  23828393 gctaggaagtaaagcgtctaaggtaaggatttttttcccacacgttcttactaagtgttaggactttgttatgaaatagtggtagaaatt 23828304  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 11387177 - 11387243
Alignment:
Q  275 ggtaagagtttttt-ctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaa 340  Q
    |||||||||||||| | ||| |||| ||||||| | |||||| |||||||||||||||| |||||||    
T  11387177 ggtaagagtttttttcccatacgttcttactaaatattaggaccgtgttatgaaatagtagtagaaa 11387243  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 44788527 - 44788584
Alignment:
Q  285 ttttctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatt 342  Q
    ||||| ||| |||| ||||||||||||||||  ||||||| |||||||||||| ||||    
T  44788527 ttttcccatacgttcttactaagtgttaggactgtgttattaaatagtggtagtaatt 44788584  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 40841644 - 40841586
Alignment:
Q  284 tttttctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatt 342  Q
    |||||| ||| |||| ||||||||||||||||  ||||||| |||||||||||| ||||    
T  40841644 tttttcccatacgttcttactaagtgttaggactgtgttattaaatagtggtagcaatt 40841586  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 10250412 - 10250461
Alignment:
Q  295 cgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatttt 344  Q
    |||| |||||||||||| ||| |||||| | |||||||||||||||||||    
T  10250412 cgttcttactaagtgttgggaccgtgttttaaaatagtggtagaaatttt 10250461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 27026643 - 27026684
Alignment:
Q  295 cgtttttactaagtgttaggatcgtgttatgaaatagtggta 336  Q
    ||||||||||||||| |||||| ||||||| |||||||||||    
T  27026643 cgtttttactaagtgctaggattgtgttattaaatagtggta 27026684  T

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