View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19570_low_20 (Length: 250)
Name: NF19570_low_20
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19570_low_20 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 15128300 - 15128537
Alignment:
| Q |
13 |
aatatgtatgcattggatgtagttaaaatttacatgaaccattgaataagaaccggtttgattatatatttgatttgtatgtttaggctgtagagaaatg |
112 |
Q |
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| T |
15128300 |
aatatgtatgcattggatgtagttaaaatttacatgaaccattcaataagaaccggtttgattatatatttgatttgtatgtttaggctgtagagaaatg |
15128399 |
T |
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| Q |
113 |
tcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaaatctttggcaacaatctattgcatacaacttactctttcactttca |
212 |
Q |
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| T |
15128400 |
tcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaaatctttggcaacaatctattgcatacaacttactctttcactttca |
15128499 |
T |
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| Q |
213 |
ccattaacaaaactatataaatatactcatcgaagcta |
250 |
Q |
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| T |
15128500 |
ccattaacaaaactatataaatatactcatcgaagcta |
15128537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 14946709 - 14946588
Alignment:
| Q |
41 |
tttacatgaaccattgaataagaaccggtttgattatatatttgatttgtatgtttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagcta |
140 |
Q |
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|||| |||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14946709 |
tttatatgagccatttaatacaaaccggtttgattatat--ttgatttgtatgtttaggctgtagagaaatgtcagcttaaggaaacaatctgcaagcta |
14946612 |
T |
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| Q |
141 |
ccaagtctcttggactcttctggt |
164 |
Q |
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| T |
14946611 |
ccaagtctcttggactcttctggt |
14946588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 5279672 - 5279577
Alignment:
| Q |
77 |
tatatttgatttgtatgtttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaaatcttt |
172 |
Q |
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| T |
5279672 |
tatatttgatgtgtgtgtttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaagtcttt |
5279577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 5316425 - 5316519
Alignment:
| Q |
78 |
atatttgatttgtatgtttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaaatcttt |
172 |
Q |
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| T |
5316425 |
atatttgatttgtatatttaggctgtaaaaaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaagtcttt |
5316519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 5287401 - 5287309
Alignment:
| Q |
80 |
atttgatttgtatgtttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaaatcttt |
172 |
Q |
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| T |
5287401 |
atttgatttgtatatttaggctgtagaaaaatgtcagcttaaggaaacaatcagcaagctaccaaatctcttagactcttctggtaagtcttt |
5287309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 5309801 - 5309871
Alignment:
| Q |
102 |
gtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaaatcttt |
172 |
Q |
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| T |
5309801 |
gtagagaaatgtcagcttaaggaaacaatcagcaagctatcaagtctcttggactcttctggtaagtcttt |
5309871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 31523952 - 31523856
Alignment:
| Q |
94 |
tttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaaatctttggcaacaatctattgcat |
190 |
Q |
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|||||||| | ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| |||||| |
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| T |
31523952 |
tttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtctttggcaacaatctgttgcat |
31523856 |
T |
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