View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19570_low_23 (Length: 242)
Name: NF19570_low_23
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19570_low_23 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 43999041 - 43999266
Alignment:
| Q |
1 |
gtaaggtataaacaagaactactatcaaatcaatatcatcatgaaatttagatgaatcatgctctcaatcataatgcattttgatagtatcctaaacata |
100 |
Q |
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| T |
43999041 |
gtaaggtataaacaagaactactatcaaatcaatatcatcatgaaatttagacgaatcatgctctcaatcataatgcattttgatggtatcctaaacata |
43999140 |
T |
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| Q |
101 |
tatagcagtaatacataatggattggaataatgcatctttataatcaagctaagttcatcggtgatgctttatagaactatatattaatatatagtagaa |
200 |
Q |
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| T |
43999141 |
tttagcagtaatacataatggattggaataatgcatctttataatcaagctaagttcatcggtgatgctttatagaactatatattaatatatagtagaa |
43999240 |
T |
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| Q |
201 |
gttaagatgcttgattctcaaaatac |
226 |
Q |
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| T |
43999241 |
gttaagatgcttgattctcaaaatac |
43999266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 18195512 - 18195563
Alignment:
| Q |
39 |
tcatgaaatttagatgaatcatgctctcaatcataatgcattttgatagtat |
90 |
Q |
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| T |
18195512 |
tcatgaaatttagaccaatcatgctgtcaaacatgatgcattttgatagtat |
18195563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 285534 - 285483
Alignment:
| Q |
39 |
tcatgaaatttagatgaatcatgctctcaatcataatgcattttgatagtat |
90 |
Q |
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| T |
285534 |
tcatgaaatttagaccaatcatgctgtcaaacatgatgcattttgatagtat |
285483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 291890 - 291839
Alignment:
| Q |
39 |
tcatgaaatttagatgaatcatgctctcaatcataatgcattttgatagtat |
90 |
Q |
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| T |
291890 |
tcatgaaatttagaccaatcatgctgtcaaacatgatgcattttgatagtat |
291839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 6650582 - 6650633
Alignment:
| Q |
39 |
tcatgaaatttagatgaatcatgctctcaatcataatgcattttgatagtat |
90 |
Q |
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| T |
6650582 |
tcatgaaatttagaccgatcatgctctcaaacatgatgcattttgatagtat |
6650633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 6730948 - 6730999
Alignment:
| Q |
39 |
tcatgaaatttagatgaatcatgctctcaatcataatgcattttgatagtat |
90 |
Q |
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|||||||||||||| ||||||||||||| ||| ||||||||||||||||| |
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| T |
6730948 |
tcatgaaatttagaccgatcatgctctcaaacatgatgcattttgatagtat |
6730999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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