View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19570_low_25 (Length: 234)
Name: NF19570_low_25
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19570_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 13353596 - 13353396
Alignment:
| Q |
16 |
atatgtgattggcttattgaattactaaatgtaaaaacaaggcgatggtactatcaaccatgtaatatttacctgtcaaaaactcaacagcttcgtcgag |
115 |
Q |
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| T |
13353596 |
atatgtgattggcttattgaattactaaatgtaaaaacaaggcgatggtactatcaaccatgtaatatttacctgtcaaaaactcaacagcttcgtcgag |
13353497 |
T |
|
| Q |
116 |
gaccagattaagtaactggtcatatcctttcagagtcccgtaactgcaattcaacaaattgtaatatgttagacccttatttcccaagtaaacgctagga |
215 |
Q |
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| T |
13353496 |
gaccagattaagtaactggtcatatcctttcagagtcccgtaactgcaattcaacaaattgtaatatgttagacccttatttcccaagtaaatgctagga |
13353397 |
T |
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| Q |
216 |
a |
216 |
Q |
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| |
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| T |
13353396 |
a |
13353396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 13383368 - 13383480
Alignment:
| Q |
81 |
tatttacctgtcaaaaactcaacagcttcgtcgaggaccagattaagtaactggtcatatcctttcagagt-cccgtaactgcaattcaacaaattgtaa |
179 |
Q |
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| T |
13383368 |
tatttacctcttaaaaactcaacagcttcatccaggaaaaggttaagtaactggtcatacccttttagagtacctgtcactgcaattcaacaaattgtaa |
13383467 |
T |
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| Q |
180 |
-tatgttagaccc |
191 |
Q |
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| T |
13383468 |
ttatgttagaccc |
13383480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 23714485 - 23714593
Alignment:
| Q |
81 |
tatttacctgtcaaaaactcaacagcttcgtcgaggaccagattaagtaactggtcatatcctttcagag-tcccgtaactgcaattcaacaaattgtaa |
179 |
Q |
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||||||||| ||| |||||||||||||||||| || || || |||||||| || ||||||||||||| || ||| || |||| |||||||||||||| || |
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| T |
23714485 |
tatttacctctcagaaactcaacagcttcgtccagtacaaggttaagtaattgatcatatcctttcaaagttcctgtcactgaaattcaacaaattgaaa |
23714584 |
T |
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| Q |
180 |
tatgttaga |
188 |
Q |
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| T |
23714585 |
tatgttaga |
23714593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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