View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19570_low_3 (Length: 627)
Name: NF19570_low_3
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19570_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 128 - 407
Target Start/End: Original strand, 927018 - 927297
Alignment:
| Q |
128 |
gtgattttagttgttttgtgattcaagagatggcttgtgggatgggtttctaaagagcagaaacaggatggataggcatcactgcatcaattacggtggt |
227 |
Q |
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| T |
927018 |
gtgattttagttgttttgtgattcaagagatggcttgtgggatgggtttctaaagagcagaaacaggatggataggcatcactgcatcaattacggtggt |
927117 |
T |
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| Q |
228 |
ctctaatctatagctaagctactagtgtctaataatttgataatttcaacaccatttttatgtatatcatttacatcttcactaatctaccacaatttta |
327 |
Q |
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| T |
927118 |
ctctaatctatagctaagctactagtgtctaataatttgataatttcaacaccatttttatgtatatcatttacatcttcactaatctaccacaatttta |
927217 |
T |
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| Q |
328 |
tatagctttgatcttcctaggatgcaccttatagacctaagcataagcagcaccttatagagattactcataatataata |
407 |
Q |
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| T |
927218 |
tatacctttgatcttcctaggatgcaccttatagacctaagcataagcagcaccttatagagattactcataatataata |
927297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 926438 - 926560
Alignment:
| Q |
1 |
tcgaagttgggatcaagcaagaaagtgaagtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatcc |
100 |
Q |
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| T |
926438 |
tcgaagttgggatcaagcaagaaagtgaagtaatggatttcaaggctgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatcc |
926537 |
T |
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| Q |
101 |
aaacctatgaagctcacatccat |
123 |
Q |
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| T |
926538 |
aaacctatgaagctcacatccat |
926560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 410 - 575
Target Start/End: Original strand, 927849 - 928013
Alignment:
| Q |
410 |
ctaagactgttttaacttcgcttgcctgttactttcctttcttaacaaggcaaacctcaaatatcacnnnnnnnnnnnnnntgtaatacatcagaattga |
509 |
Q |
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| T |
927849 |
ctaaaactgttttaacttcgcttgcctattactttcctttcttaacaaggcaaacctcaaatatcacaaaaaaagaaaaa-tgtaatacatcagaattga |
927947 |
T |
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| Q |
510 |
ttctaaagatagatttcaatattaaaagaaaattatgattgaaaaatgaaacttattaaagttgga |
575 |
Q |
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| T |
927948 |
ttctaaagatagatttcaatattaaaagaaaattatgattgaaaaatgaaacgtattaaagttgga |
928013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 924473 - 924555
Alignment:
| Q |
29 |
agtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatgaa |
111 |
Q |
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| T |
924473 |
agtaagggatttcaaggctgctttatgtctctgcctgccatggttgacttgaatatgcattaaaatggatccaagcctatgaa |
924555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 615
Target Start/End: Original strand, 928079 - 928125
Alignment:
| Q |
569 |
agttggagatcattagaaagaacactaaacatgatcatatctctgct |
615 |
Q |
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| T |
928079 |
agttggagatcattagaaagaacactaaacatgatcatatctctgct |
928125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 615
Target Start/End: Original strand, 938998 - 939044
Alignment:
| Q |
569 |
agttggagatcattagaaagaacactaaacatgatcatatctctgct |
615 |
Q |
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| T |
938998 |
agttggagatcagtagaaagaacactgaaaataatcatatctctgct |
939044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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