View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19570_low_4 (Length: 571)
Name: NF19570_low_4
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19570_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 7568015 - 7567642
Alignment:
| Q |
18 |
ccatctccattattaagatagcatataatgttagtaacacatttttaggaagtaacacattctttaacacacatattggttaaaatagtggtacttatga |
117 |
Q |
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| T |
7568015 |
ccatctccattattaagatagcatataatgttagtaacacatttttaggaagtaacacattctttaacacacatattggttaaaatagttgtacttatga |
7567916 |
T |
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| Q |
118 |
aatgacttgctacaaccggtttcatttgtgttgtcaccggtttacaacgatattaaattttcttaatacaataaaaatgttggattaacttgctatacta |
217 |
Q |
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| T |
7567915 |
aatgacttgctacaaccggtttcatttgtgttgtcaccggtttacaacgatattaaattttcttaatacaataaaaaagttggattaacttgctatacta |
7567816 |
T |
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| Q |
218 |
agttaacctcaaatgtccactttaaacttgtttcattaaaccacgttaattaatgagatcaatttgaatttcaaccaaaataagatgttagtgatgttgg |
317 |
Q |
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| T |
7567815 |
agttaacctcaaatgtccactttaaacttgtttcattaaaccacgttaattagtgatatgaatttgaatttcaaccaaaataagatgttagtgatgttgg |
7567716 |
T |
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| Q |
318 |
cactcgtgtaattcaaatttggcttctactctcaaaatccatagcgaggaaatgtcacctccaactgcacaaca |
391 |
Q |
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| T |
7567715 |
cactcttgtaattcaaatttggcttctactctcaaaatccatagcgaggaaatgtcacctccaactgcacaaca |
7567642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 412 - 478
Target Start/End: Complemental strand, 7567617 - 7567551
Alignment:
| Q |
412 |
agtggaatagcacaaaatttatacactagtattaattttcacaccatttcttatcaaatatacacga |
478 |
Q |
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| T |
7567617 |
agtggaatagcacaaaatttatacactagtattaattttcataccatttcttatcaaatatacacga |
7567551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 518 - 565
Target Start/End: Complemental strand, 7567507 - 7567460
Alignment:
| Q |
518 |
cacatataactgtaaagttttaggttcaaattcaaatgatgatgtcca |
565 |
Q |
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| T |
7567507 |
cacatataactgtaaggttttaggttcaaattcaaatgaagatgtcca |
7567460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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