View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19570_low_5 (Length: 536)
Name: NF19570_low_5
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19570_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 4 - 525
Target Start/End: Complemental strand, 35628114 - 35627580
Alignment:
| Q |
4 |
cacacaaaatatgtgcaagtttagttttagtactctccttattaacttttatgtgcatggaaaaaacatttcatcaaaat--------------atagaa |
89 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
35628114 |
cacacaaaatatgtgcaagtttagttttagtactctccttattaacctttatgtgcatggaaaaaacatttcatcaaaatttagatatccaaatatagaa |
35628015 |
T |
|
| Q |
90 |
ttttccatcaacataacatacagtactaaaatcttaaaattgatgtattttacaaaaattatgcaggtgttctaagcccttctggaagcaaaattggagg |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35628014 |
ttttccatcaacataacatacagtactaaaatcttaaaattgatgtattttacaaaa-ttatgcaggtgttctaagcccttctggaagcaaaattggagg |
35627916 |
T |
|
| Q |
190 |
agcctcaagcattcaagcctctgcattgactctcatttttgcactgtccactctctctgtcaccatattcttctgattttacagttcacatttatcctat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35627915 |
agcctcaagcattcaagcctctgcattgactctcatttttgcactgtccactctctctgtcaccatattcttctgattttacagttcacatttatcctat |
35627816 |
T |
|
| Q |
290 |
gtgtcattagtttcatatatcttaatttcacttcctttttgtgtattgagtgctttgctttagtggaatattacacactttaattaggacctacatcaca |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35627815 |
gtgtcattagtttcatatatcttaatttcacttcctttttgtgtattgagtgctttgctttagtggaatattacacactttaattaggacctacatcaca |
35627716 |
T |
|
| Q |
390 |
acactaccgagctcttcattcttggtgatgtgctatttattcttattttttcttcccaactacattcttgctatatctgtaataatattttatttcaata |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35627715 |
acactaccgagctcttcattcttggtgatgtgctatttattcttattttttcttcccaactacattcttgctatatctgtaataatattttatttcaata |
35627616 |
T |
|
| Q |
490 |
tgacatttcattattcgatgatttaaatatgatatt |
525 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
35627615 |
tgacatttcatttgtcgatgatttaaatatgatatt |
35627580 |
T |
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