View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19570_low_8 (Length: 439)
Name: NF19570_low_8
Description: NF19570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19570_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 37669716 - 37669308
Alignment:
| Q |
17 |
aatatttgtataaaataccaaaagtgcacaagtgtaatactctacccataaaaagtttaattttgtacaaacaccattatttatttatgttgacaaaaca |
116 |
Q |
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| T |
37669716 |
aatatttgtataaaataccaaaattgcacaagtgcaatactctacccagaaaaagtttaattttgtacaaacaccattatttatttatgttgacaaaaca |
37669617 |
T |
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| Q |
117 |
aatacaattttgattgtttatatttggaatttaccatttgtattggcataagctaatatataccgtaaaaacatgtaataaaagaaaaaacaatattgtt |
216 |
Q |
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| T |
37669616 |
aatacaattttgattgtttatatttggaatttaccatttgtattggcataagctaatatataccgtaaaaacatgtaataaaagaaaaaacaatattgtt |
37669517 |
T |
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| Q |
217 |
tcttttaggtcatcatcacacttcatgctgatatcatccaggtacaatatccacgtggcaagagaatgtatttttggtcttggaccaattgaaatgtggt |
316 |
Q |
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| T |
37669516 |
tcttttaggtcatcatcacacttcatgctgatatcatccaggtacaatatccacgtggcaagagaatgtatttttggtcttggaccaattgaaatgtggt |
37669417 |
T |
|
| Q |
317 |
gaccgtcctcttggtgtatacctacatacatatgcttcatcataattataagcaattatcataggatttttagatttaaatacaagaactttttgttttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37669416 |
gaccgtcctcttggtgtatacctacatacatatgcttcatcataattataagcaattatcataggatttttagatttaaatacaagaactttttgttttc |
37669317 |
T |
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| Q |
417 |
tctctaccc |
425 |
Q |
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| T |
37669316 |
tctctaccc |
37669308 |
T |
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