View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19571_high_1 (Length: 404)

Name: NF19571_high_1
Description: NF19571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19571_high_1
NF19571_high_1
[»] chr5 (2 HSPs)
chr5 (87-244)||(4906279-4906436)
chr5 (302-389)||(4906492-4906579)
[»] chr2 (3 HSPs)
chr2 (87-244)||(31568036-31568193)
chr2 (336-389)||(31568282-31568335)
chr2 (152-214)||(31568155-31568225)
[»] chr4 (8 HSPs)
chr4 (87-244)||(33409618-33409775)
chr4 (87-244)||(6790767-6790920)
chr4 (300-389)||(33409830-33409919)
chr4 (300-389)||(6790622-6790711)
chr4 (96-183)||(41881999-41882086)
chr4 (336-389)||(41882184-41882237)
chr4 (178-214)||(6790735-6790771)
chr4 (198-242)||(41882047-41882091)
[»] chr1 (3 HSPs)
chr1 (87-244)||(47585692-47585849)
chr1 (300-389)||(47585904-47585993)
chr1 (178-214)||(47585845-47585881)
[»] chr3 (2 HSPs)
chr3 (87-244)||(40871216-40871373)
chr3 (300-385)||(40871429-40871514)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 4906279 - 4906436
Alignment:
Q  87 aattgagtgtcgtggaatcacttgatgttcctgtattcacccaaacaatttttccatcaaaattacttttcccaatcaatttgtgttcatgaacaatttt 186  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4906279 aattgagtgttgtggaatcacttgatgttcctgtattcacccaaacaatttttccatcaaaatttcttttcccaatcaatttgtgttcatgaacaatttt 4906378  T
Q  187 ttatcttcatccaaattttcttttcccaatcacttcgtgttcatgaacaatcaaacaa 244  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4906379 ttatcttcacccaaattttcttttcccaatcacttcgtgttcatgaacaatcaaacaa 4906436  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 302 - 389
Target Start/End: Original strand, 4906492 - 4906579
Alignment:
Q  302 gggtagttcccaaattcatcaaacnnnnnnnggaaattgaaatttgttatgtggatcaaactaccattgcaaaaccttgggtaaatta 389  Q
    ||||||||||||||||||||||||       || ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  4906492 gggtagttcccaaattcatcaaacaaaaaaaggcaattgaaatatgttatgtggatcaaactaccatcgcaaaaccttgggtaaatta 4906579  T

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Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 31568036 - 31568193
Alignment:
Q  87 aattgagtgtcgtggaatcacttgatgttcctgtattcacccaaacaatttttccatcaaaattacttttcccaatcaatttgtgttcatgaacaatttt 186  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31568036 aattgagtgccgtggaatcacttcgtgttcctgtattcacccaaacaatttttccatcaaaatttcttttcccaatcaatttgtgttcatgaacaatttt 31568135  T
Q  187 ttatcttcatccaaattttcttttcccaatcacttcgtgttcatgaacaatcaaacaa 244  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  31568136 ttatcttcatccaaatttccttttcccaatcactttgtgttcatgaacaatcaaacaa 31568193  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 389
Target Start/End: Original strand, 31568282 - 31568335
Alignment:
Q  336 aattgaaatttgttatgtggatcaaactaccattgcaaaaccttgggtaaatta 389  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  31568282 aattaaaatttgttatgtggattaaactaccattgcaaaaacttgggtaaatta 31568335  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 31568155 - 31568225
Alignment:
Q  152 cttttcccaatcaatttgtgttcatgaaca--------attttttatcttcatccaaattttcttttccca 214  Q
    ||||||||||||| ||||||||||||||||        |||||||||| |||||||||||| |||||||||    
T  31568155 cttttcccaatcactttgtgttcatgaacaatcaaacaattttttatcgtcatccaaatttccttttccca 31568225  T

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Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 33409618 - 33409775
Alignment:
Q  87 aattgagtgtcgtggaatcacttgatgttcctgtattcacccaaacaatttttccatcaaaattacttttcccaatcaatttgtgttcatgaacaatttt 186  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  33409618 aattgagtgtcgtggaatcacttcgtgtacctgtattcacccaaacaatttttccatcaaaatttcttttcccaattaatttgtgttcatgaacaatttt 33409717  T
Q  187 ttatcttcatccaaattttcttttcccaatcacttcgtgttcatgaacaatcaaacaa 244  Q
    ||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  33409718 ttatcttcacccaaattttcttttcccaatcactttgtgttcctgaacaatcaaacaa 33409775  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 87 - 244
Target Start/End: Complemental strand, 6790920 - 6790767
Alignment:
Q  87 aattgagtgtcgtggaatcacttgatgttcctgtattcacccaaacaatttttccatcaaaattacttttcccaatcaatttgtgttcatgaacaatttt 186  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||    ||||||||||||||||| |||||||||    
T  6790920 aattgagtgccgtggaatcactttgtgttcctgtattcacccaaacaatttttccatcaaaatttcttt----aatcaatttgtgttcattaacaatttt 6790825  T
Q  187 ttatcttcatccaaattttcttttcccaatcacttcgtgttcatgaacaatcaaacaa 244  Q
    ||||||||||  |||||| ||||||||||||||||||||||  |||||||||||||||    
T  6790824 ttatcttcatttaaatttccttttcccaatcacttcgtgtttttgaacaatcaaacaa 6790767  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 389
Target Start/End: Original strand, 33409830 - 33409919
Alignment:
Q  300 gtgggtagttcccaaattcatcaaacnnnnnnnggaaattgaaatttgttatgtggatcaaactaccattgcaaaaccttgggtaaatta 389  Q
    ||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33409830 gtgggtagttcccaaattcatcaaacaaaaaaaggcaattgaaatttgttatgtggatcaaactaccattgcaaaaccttgggtaaatta 33409919  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 6790711 - 6790622
Alignment:
Q  300 gtgggtagttcccaaattcatcaaacnnnnnnnggaaattgaaatttgttatgtggatcaaactaccattgcaaaaccttgggtaaatta 389  Q
    |||||||||| |||||||||||||||       || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  6790711 gtgggtagtttccaaattcatcaaacaaaaaaaggcaattgaaatttattatgtggatcaaactatcattgcaaaaccttgggtaaatta 6790622  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 41881999 - 41882086
Alignment:
Q  96 tcgtggaatcacttgatgttcctgtattcacccaaacaattttt-ccatcaaaattacttttcccaatcaatttgtgttcatgaacaat 183  Q
    ||||||||||||||  ||||| |||||||||||||||||||||| |||||||| || |||||| |||||| ||  ||||| ||||||||    
T  41881999 tcgtggaatcacttcgtgttc-tgtattcacccaaacaatttttcccatcaaatttccttttctcaatcacttcatgttcctgaacaat 41882086  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 389
Target Start/End: Original strand, 41882184 - 41882237
Alignment:
Q  336 aattgaaatttgttatgtggatcaaactaccattgcaaaaccttgggtaaatta 389  Q
    |||| ||||||||||||  ||||||| |||||| ||||||||||||||||||||    
T  41882184 aattaaaatttgttatgaagatcaaattaccatcgcaaaaccttgggtaaatta 41882237  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 6790771 - 6790735
Alignment:
Q  178 aacaattttttatcttcatccaaattttcttttccca 214  Q
    |||||||||||||||||| |||||||| |||||||||    
T  6790771 aacaattttttatcttcacccaaatttccttttccca 6790735  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 41882047 - 41882091
Alignment:
Q  198 caaattttcttttcccaatcacttcgtgttcatgaacaatcaaac 242  Q
    ||||||| |||||| |||||||||| ||||| |||||||||||||    
T  41882047 caaatttccttttctcaatcacttcatgttcctgaacaatcaaac 41882091  T

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Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 47585692 - 47585849
Alignment:
Q  87 aattgagtgtcgtggaatcacttgatgttcctgtattcacccaaacaatttttccatcaaaattacttttcccaatcaatttgtgttcatgaacaatttt 186  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47585692 aattgagtgccgtggaatcacttcgtgttcctgtattcacccaaacaatttttccatcaaaatttcttttcccaatcaatttgtgttcatgaacaatttt 47585791  T
Q  187 ttatcttcatccaaattttcttttcccaatcacttcgtgttcatgaacaatcaaacaa 244  Q
    ||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||    
T  47585792 ttatcttcacccaaatttccttttcccaatcactttgtgttcctgaacaatcaaacaa 47585849  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 389
Target Start/End: Original strand, 47585904 - 47585993
Alignment:
Q  300 gtgggtagttcccaaattcatcaaacnnnnnnnggaaattgaaatttgttatgtggatcaaactaccattgcaaaaccttgggtaaatta 389  Q
    ||||||||||||||||||||||||||       |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47585904 gtgggtagttcccaaattcatcaaacaaaaaaagccaattgaaatttgttatgtggatcaaactaccattgcaaaaccttgggtaaatta 47585993  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 47585845 - 47585881
Alignment:
Q  178 aacaattttttatcttcatccaaattttcttttccca 214  Q
    |||||||||||||||||| |||||||| |||||||||    
T  47585845 aacaattttttatcttcacccaaatttccttttccca 47585881  T

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Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 40871216 - 40871373
Alignment:
Q  87 aattgagtgtcgtggaatcacttgatgttcctgtattcacccaaacaatttttccatcaaaattacttttcccaatcaatttgtgttcatgaacaatttt 186  Q
    ||||||||| |||||||||||||  |||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  40871216 aattgagtgccgtggaatcacttcgtgttcctgtattaacccaaacaatttttccatcaaaatttcttttccaaatcaatttgtgttcatgaacaatttt 40871315  T
Q  187 ttatcttcatccaaattttcttttcccaatcacttcgtgttcatgaacaatcaaacaa 244  Q
    ||||||||| | |||||| |||||||||||||||| |||||| |||||||||||||||    
T  40871316 ttatcttcacctaaatttccttttcccaatcactttgtgttcctgaacaatcaaacaa 40871373  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 385
Target Start/End: Original strand, 40871429 - 40871514
Alignment:
Q  300 gtgggtagttcccaaattcatcaaacnnnnnnnggaaattgaaatttgttatgtggatcaaactaccattgcaaaaccttgggtaa 385  Q
    ||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40871429 gtgggtagttcccaaattcatcaaaccaaaaaaggcaattgaaatttgttatgtggatcaaactaccattgcaaaaccttgggtaa 40871514  T

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