View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19571_low_2 (Length: 285)
Name: NF19571_low_2
Description: NF19571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19571_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 43657823 - 43657573
Alignment:
| Q |
1 |
gcatgtattatgttaacatcactgtatgagcaggcaggattgtgaatgaaattacaagcaggtaccaaagacaaaaaaccatagattttgatatctatat |
100 |
Q |
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| T |
43657823 |
gcatgtattatgttaacatcactgtatgagcaggcaggattgtgagtgcaattacaagcaggtaccaaagacaaaaaaccatagattttgatatctatat |
43657724 |
T |
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| Q |
101 |
tcttttttcttttgaaggactttagcaatggtaattaaggaactccattttttgtacacaagcctagcattatcgagactttcgaatggaactcgatcca |
200 |
Q |
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| T |
43657723 |
tcttttttcttttgaaggactttagcaatggtaatcaaggaactccattttttgcacacaagcctagcattatcgagactttcgcatgcaacacgatcca |
43657624 |
T |
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| Q |
201 |
aacacatttcaagagtatcattgggaagaagaaaaatttcggactttactt |
251 |
Q |
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| T |
43657623 |
aacacatttcaagaataccatcgggaagaagaaagatttcggactttactt |
43657573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 10367471 - 10367374
Alignment:
| Q |
137 |
aaggaactccattttttgtacacaagcctagcattatcgagactttcgaatggaactcgatccaaacacatttcaagagtatcattgggaagaagaaa |
234 |
Q |
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| T |
10367471 |
aaggaactccaattcttgcaaacaagcctaacattcttgagaccttcgaatggaagacgatccaaacacaattcaagaatgtcatcaggaagaagaaa |
10367374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 10378996 - 10378882
Alignment:
| Q |
137 |
aaggaactccattttttgtacacaagcctagcattatcgagactttcgaatggaactcgatccaaacacatttcaagagtatcattgggaagaagaaaaa |
236 |
Q |
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| T |
10378996 |
aaggaactccaattcttgcaagcaagcctaacattcttgagactttcaaatggaagacaattcaaacacaattcaagaatgtcatcaggaagaagaaaga |
10378897 |
T |
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| Q |
237 |
tttcggactttactt |
251 |
Q |
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| T |
10378896 |
tttcggactgtactt |
10378882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 10371120 - 10371080
Alignment:
| Q |
131 |
gtaattaaggaactccattttttgtacacaagcctagcatt |
171 |
Q |
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| T |
10371120 |
gtaattaaggaactccattatttgaacacgagcctagcatt |
10371080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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