View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19572_high_2 (Length: 391)
Name: NF19572_high_2
Description: NF19572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19572_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 44199395 - 44199658
Alignment:
| Q |
19 |
cccctcttgatcattttcaacaactttggcctcaagattatgccaaacactggtgagcgccattaagagtcttacattagatataatatactttgaaaaa |
118 |
Q |
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| T |
44199395 |
cccctcttgatcattttcaacaactttggcctcaagattatgccaaacactggtgagtgccattaagagtcttacattagatataatatactttgaaaaa |
44199494 |
T |
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| Q |
119 |
tacttttcaagtaaaatattatttttcaacttatactcgtgtgatatcaagtattaggtctaacttaagttttaagatattccaaccatcttcttgatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
44199495 |
tacttttcaagtaaaatattatttttcaacttatactcgtgtgatatcaaatattaggtctaacttaagttttaagatattccaaccatctttttgattt |
44199594 |
T |
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| Q |
219 |
gtgtgtgatgtgtcctcaattcacatccaatgctacaaaaacaataattaagctaactaactac |
282 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44199595 |
gtgtgtgatgtgtcctcaattctcatccaatgctacaaaaacaataattaagctaactaactac |
44199658 |
T |
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