View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19572_high_5 (Length: 346)
Name: NF19572_high_5
Description: NF19572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19572_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 38765712 - 38765392
Alignment:
| Q |
17 |
aaagactggttgagtacagaaaagaattaaaatgagaaaaagaagaatgtcagtaagtaatattgatattataagttggaaccaattaactaattgatca |
116 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38765712 |
aaagtctggttgagtaaagaaaagaattaaaatgagaaaaagaagaatgtcagtaagtaatattgatattataagttggtaccaattaactaattgatca |
38765613 |
T |
|
| Q |
117 |
atcagaaaagnnnnnnnn---ttaattacttgtagtacaagccacattccccaaaaggtgttggaaagaagcatgaggaagcaacccttgatccatgatg |
213 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38765612 |
atcagaaaagaaaaaaaaaattaaattacttgcagtacaagccacattccccaaaaggtgttggaaagaagcatgaggaagcaacccttgatccatgatg |
38765513 |
T |
|
| Q |
214 |
atccagatagaa---catggccctgatgttgttgggttttatggtaatttcccaaaaaatgaaaatgggataaaagttccaattgaggacctttataaaa |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38765512 |
atccagatagaagaacatggccctgatgttgttgggttttatggtaatttcccaaaaaatgaaaatgggataaaagttccaattgaggacctttataaaa |
38765413 |
T |
|
| Q |
311 |
agcaagggttgctgctccacc |
331 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38765412 |
agcaagggttgctgctccacc |
38765392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University