View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19572_high_8 (Length: 269)

Name: NF19572_high_8
Description: NF19572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19572_high_8
NF19572_high_8
[»] chr1 (10 HSPs)
chr1 (1-154)||(46887229-46887382)
chr1 (165-249)||(46887717-46887801)
chr1 (1-164)||(26051308-26051471)
chr1 (23-108)||(30786668-30786753)
chr1 (1-105)||(46889250-46889354)
chr1 (1-104)||(26049269-26049372)
chr1 (1-106)||(43043092-43043197)
chr1 (21-105)||(36729371-36729455)
chr1 (10-107)||(20063179-20063275)
chr1 (111-164)||(20061493-20061546)
[»] chr2 (7 HSPs)
chr2 (20-155)||(10376949-10377084)
chr2 (1-105)||(11105471-11105575)
chr2 (20-105)||(10374456-10374541)
chr2 (1-103)||(19259323-19259425)
chr2 (20-105)||(27614309-27614394)
chr2 (1-105)||(24574397-24574501)
chr2 (1-106)||(36558535-36558637)
[»] chr8 (6 HSPs)
chr8 (1-107)||(12230917-12231023)
chr8 (20-155)||(24801276-24801410)
chr8 (20-105)||(33327513-33327598)
chr8 (27-105)||(31518138-31518216)
chr8 (20-93)||(24800355-24800428)
chr8 (1-42)||(375419-375460)
[»] chr7 (2 HSPs)
chr7 (1-105)||(4588263-4588367)
chr7 (1-95)||(218402-218496)
[»] chr4 (10 HSPs)
chr4 (1-105)||(12571503-12571607)
chr4 (1-105)||(54349582-54349686)
chr4 (1-104)||(53019586-53019689)
chr4 (1-106)||(55440910-55441015)
chr4 (8-164)||(24778216-24778372)
chr4 (1-105)||(39162792-39162896)
chr4 (1-103)||(5555577-5555679)
chr4 (1-103)||(35801756-35801858)
chr4 (20-106)||(46611984-46612070)
chr4 (20-95)||(4947675-4947750)
[»] chr5 (8 HSPs)
chr5 (1-108)||(20506710-20506817)
chr5 (104-247)||(27596478-27596619)
chr5 (1-105)||(21946750-21946854)
chr5 (1-95)||(7015053-7015147)
chr5 (1-105)||(31813140-31813244)
chr5 (1-88)||(10735344-10735431)
chr5 (77-155)||(1494277-1494355)
chr5 (10-105)||(33270738-33270832)
[»] chr3 (6 HSPs)
chr3 (21-103)||(39944908-39944990)
chr3 (20-91)||(43543786-43543857)
chr3 (8-88)||(49237486-49237566)
chr3 (82-155)||(1255685-1255758)
chr3 (1-105)||(25484820-25484923)
chr3 (20-86)||(49021438-49021504)
[»] scaffold0316 (1 HSPs)
scaffold0316 (1-105)||(11299-11403)
[»] scaffold0007 (1 HSPs)
scaffold0007 (10-107)||(197678-197773)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 46887229 - 46887382
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||||| | ||| || |||||||||||||||||||||||| ||||    
T  46887229 ttggtcgaaatctctttgcactttgcaacatgtcgaaataactcatctgccttgtcgaaaacataatcattagttcgaccaaatatttcatttttggtgt 46887328  T
Q  101 taacagagtccccccaaaatgttgtttctcgaaagagatgagaggaataacatt 154  Q
    |||||||| || |||| ||||||||||||||||||| |||||||||||||||||    
T  46887329 taacagaggcctcccagaatgttgtttctcgaaagacatgagaggaataacatt 46887382  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 46887717 - 46887801
Alignment:
Q  165 tcaccaatttagagaaaacacttgatgacctcttttgaaaacttacccaaatttttagagaagatggtttcggcttcatcatctt 249  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  46887717 tcaccaatttagagaaaacactttatgacctcttttgaaaacttaaccaaattgttagagaagatggtttcggcttcatcatctt 46887801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 26051471 - 26051308
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| |||||| |||  ||||||||  ||||||||| ||| |||||  ||| ||||||||| ||| |||| |||||| |||||||| ||||||||| |    
T  26051471 ttggtcgaaatctttttgcactttgcaatatgtcgaaaaaactcatctaacttgtcgaaaatataatcatgatttcgacaaaatattttattttttgtat 26051372  T
Q  101 taacagagtccccccaaaatgttgtttctcgaaagagatgagaggaataacatttggaatcata 164  Q
    |||||||| || |||||||| ||||||||||||| | ||||||| |||||||||| ||| ||||    
T  26051371 taacagaggccacccaaaatattgtttctcgaaaaaaatgagagaaataacattttgaaacata 26051308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 30786668 - 30786753
Alignment:
Q  23 ttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaacagag 108  Q
    ||||| |||||||||||||| |||||||||| ||||||||| ||| || |||||||| ||||||||||||||| ||||||||||||    
T  30786668 ttgcaacatgtcgaaataacccatctgccttgtcgaaaatataatcataagttcgactaaatatttcatttttggtgttaacagag 30786753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 46889250 - 46889354
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||||||||  |||||| | |||||||||||||| |||||||||| ||||||| | ||| || ||||| |||||||||||||||||| ||||    
T  46889250 ttggtcgaaatctctttgcactttgaaacatgtcgaaataactcatctgccttgtcgaaaacataatcattagttcaaccaaatatttcatttttggtgt 46889349  T
Q  101 taaca 105  Q
    |||||    
T  46889350 taaca 46889354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 26049372 - 26049269
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| |||| |||||  ||||||||||||||||||||||| |||||  ||||||||||||| ||| |||| ||||||||||||||| |||||| || |    
T  26049372 ttggtcgaaatatctttgcactttgcagcatgtcgaaataactcatctaacttatcgaaaatataatcatgatttcgaccaaatattttatttttggtat 26049273  T
Q  101 taac 104  Q
    ||||    
T  26049272 taac 26049269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 43043197 - 43043092
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||| ||||  |||||||||  ||| |||||||| |||||||||| ||||||| | ||| |||||||| |||||||||||||||||| ||||    
T  43043197 ttggtcgaaatccctttgcactttgcagtgtgttgaaataacccatctgccttgtcgaaaacataatcatgagttccaccaaatatttcatttttggtgt 43043098  T
Q  101 taacag 106  Q
    ||||||    
T  43043097 taacag 43043092  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 36729455 - 36729371
Alignment:
Q  21 ctttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaaca 105  Q
    ||||||||||||| |||||||| |||||  ||||||||||||| ||| |||| ||||||||||||||| |||||| || ||||||    
T  36729455 ctttgcagcatgtagaaataacccatctaacttatcgaaaatataatcatgatttcgaccaaatattttatttttggtattaaca 36729371  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 20063179 - 20063275
Alignment:
Q  10 atctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaacaga 107  Q
    |||||||| || |||||||||||||||||||||  ||||| ||| ||| ||||| ||| |||| ||||||||||||||  |||||| || ||||||||    
T  20063179 atctctttgtaatttgcagcatgtcgaaataacctatctgacttgtcg-aaatataatcatgacttcgaccaaatattatatttttggtattaacaga 20063275  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 20061493 - 20061546
Alignment:
Q  111 cccccaaaatgttgtttctcgaaagagatgagaggaataacatttggaatcata 164  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||| ||| ||||    
T  20061493 cccccaaaatgttgttcctcaaaagaaatgagaggaataacattttgaaacata 20061546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 10377084 - 10376949
Alignment:
Q  20 actttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaacagagtccccccaaaa 119  Q
    |||||||||| |||||||||||| |||||||||||||||  ||||||| |||| |||||||||||||||||||||| ||||| |||||| ||| ||||||    
T  10377084 actttgcagcctgtcgaaataactcatctgccttatcgacgatagaatcatgaattcgaccaaatatttcatttttggtgttcacagaggccctccaaaa 10376985  T
Q  120 tgttgtttctcgaaagagatgagaggaataacattt 155  Q
    ||||||||||||||||| ||||||||||||||||||    
T  10376984 tgttgtttctcgaaagacatgagaggaataacattt 10376949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 11105471 - 11105575
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||| ||||  ||||||||||||||||||||||| |||||||||| ||||||| | ||| |||| ||||||||||||||||||||||||| |    
T  11105471 ttggtcgaaatccctttgcactttgcagcatgtcgaaataactcatctgccttgtcgaaaagataatcatgatttcgaccaaatatttcattttttgtat 11105570  T
Q  101 taaca 105  Q
    |||||    
T  11105571 taaca 11105575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 10374541 - 10374456
Alignment:
Q  20 actttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaaca 105  Q
    |||||||||| |||||||||||| ||| |||||||||||  ||||||| |||| |||||||||||||||||||||| |||||||||    
T  10374541 actttgcagcctgtcgaaataacccatttgccttatcgacgatagaatcatgaattcgaccaaatatttcatttttggtgttaaca 10374456  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 19259323 - 19259425
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||| ||||  ||||||| ||||||||||||||| |||||||||| ||||||| | ||| |||||||||| |||||||| ||||||| ||||    
T  19259323 ttggtcgaaatcgctttgcactttgcggcatgtcgaaataacccatctgccttgtcgaaaacataatcatgagttcgatcaaatattacatttttggtgt 19259422  T
Q  101 taa 103  Q
    |||    
T  19259423 taa 19259425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 27614309 - 27614394
Alignment:
Q  20 actttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaaca 105  Q
    ||||| |||| |||||||||||| |||||||||| ||||||| | ||| |||||||||||||||||||| |||||| |||||||||    
T  27614309 actttacagcctgtcgaaataacccatctgccttgtcgaaaacataatcatgagttcgaccaaatattttatttttggtgttaaca 27614394  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 24574397 - 24574501
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    ||||||||||||| |||  |||||| ||| | |||||||||||||| |||||| ||||||| | ||| || ||||||||||||||||| |||||| ||||    
T  24574397 ttggtcaaaatctatttgcactttgtagcctatcgaaataacacatatgccttgtcgaaaacataatcattagttcgaccaaatattttatttttggtgt 24574496  T
Q  101 taaca 105  Q
    |||||    
T  24574497 taaca 24574501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 36558637 - 36558535
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||| ||||  |||||||| ||||| ||||||||  ||||||||| |||| |    ||| ||||||||||||||||||||||| ||| ||||    
T  36558637 ttggtcgaaatccctttgcactttgcaacatgttgaaataaccaatctgccttgtcgacat---aatcatgagttcgaccaaatatttcatgtttggtgt 36558541  T
Q  101 taacag 106  Q
    ||||||    
T  36558540 taacag 36558535  T

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Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 12231023 - 12230917
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  12231023 ttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgtcgaaaatagaattatgagttcgaccaaatattttattttttgtgt 12230924  T
Q  101 taacaga 107  Q
    |||||||    
T  12230923 taacaga 12230917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 24801410 - 24801276
Alignment:
Q  20 actttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaacagagtccccccaaaa 119  Q
    |||||||  |||||||||||||||||||||||||||||||| || ||| ||| ||| ||||||||||||||||||  ||  ||||| || ||||  ||||    
T  24801410 actttgcttcatgtcgaaataacacatctgccttatcgaaa-tataatcatgggttagaccaaatatttcattttcggtactaacaaaggcccctaaaaa 24801312  T
Q  120 tgttgtttctcgaaagagatgagaggaataacattt 155  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24801311 tgttgtttctcgaaagacatgagaggaataacattt 24801276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 33327598 - 33327513
Alignment:
Q  20 actttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaaca 105  Q
    |||||||||||||||||||||||  || | |||| | ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33327598 actttgcagcatgtcgaaataacctatttaccttgttgaaaatagaatcatgagttcgaccaaatatttcattttttgtgttaaca 33327513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 31518216 - 31518138
Alignment:
Q  27 agcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaaca 105  Q
    |||||||||||||||| |||||||||| ||||||||||||| || |||||||  |||||||||||||||||||||||||    
T  31518216 agcatgtcgaaataacccatctgccttgtcgaaaatagaatcataagttcgataaaatatttcattttttgtgttaaca 31518138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 24800428 - 24800355
Alignment:
Q  20 actttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattt 93  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||| ||| |||||||||||||||||||| ||||    
T  24800428 actttgcagcatgtcgaaataacccatttgccttgtcgaaaatataatcatgagttcgaccaaatattttattt 24800355  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 375460 - 375419
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataac 42  Q
    |||||| ||||||||||  |||||||||||||||||||||||    
T  375460 ttggtcgaaatctctttgcactttgcagcatgtcgaaataac 375419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 4588367 - 4588263
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  4588367 ttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatctgccttgtcgaaaatataatcatgagttcgaccaaatatttcatttttggtgt 4588268  T
Q  101 taaca 105  Q
    |||||    
T  4588267 taaca 4588263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 218496 - 218402
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttt 95  Q
    |||||| ||||| ||||  |||||||| |||||||||||||| |||||||||| | ||||| | ||| |||||||||||||||||||||||||||    
T  218496 ttggtcgaaatccctttgcactttgcaacatgtcgaaataacccatctgccttgttgaaaacataatcatgagttcgaccaaatatttcattttt 218402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 12571503 - 12571607
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||| ||||  ||||||||||||||||||||||| ||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |||    
T  12571503 ttggtcgaaatcactttgcactttgcagcatgtcgaaataacccatctaccttgtcgaaaatagaatcatgagttcgaccaaatatttcattttttatgt 12571602  T
Q  101 taaca 105  Q
    |||||    
T  12571603 taaca 12571607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 54349582 - 54349686
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  54349582 ttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatctgccttgtcgaaaatataatcatgagttcgaccaaatatttcatttttggtgt 54349681  T
Q  101 taaca 105  Q
    |||||    
T  54349682 taaca 54349686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 53019689 - 53019586
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||||||||  |||||||| |||||||||||||| ||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  53019689 ttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatttgccttgtcgaaaatagaatcatgagttcgaccaaatatttcatttttggtgt 53019590  T
Q  101 taac 104  Q
    ||||    
T  53019589 taac 53019586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 55441015 - 55440910
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||| |||| |||||||||||||||||||||||  |||||||||| ||||||| | |||  |||||||||||||||||||||||||| ||||    
T  55441015 ttggtcgaaatccctttgtactttgcagcatgtcgaaataatccatctgccttgtcgaaaacataatcgtgagttcgaccaaatatttcatttttggtgt 55440916  T
Q  101 taacag 106  Q
    ||||||    
T  55440915 taacag 55440910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 24778216 - 24778372
Alignment:
Q  8 aaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaacaga 107  Q
    ||||| ||||| ||||||||||||||||||| ||  ||||||| || || ||| || ||| || | |||||||||||||||||||||| ||  |||||||    
T  24778216 aaatcccttttcactttgcagcatgtcgaaaaaaatcatctgcgttgtctaaattataatcataatttcgaccaaatatttcatttttggtactaacaga 24778315  T
Q  108 gtccccccaaaatgttgtttctcgaaagagatgagaggaataacatttggaatcata 164  Q
    |  |||  ||||||||||||||| ||||| |||||||||||||||||| ||| ||||    
T  24778316 ggtcccttaaaatgttgtttctcaaaagacatgagaggaataacattttgaaacata 24778372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 39162896 - 39162792
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||||||||  |||||||| ||||||||||||||  ||||||||| ||||||||| ||| ||||||||||| ||||||||||||||| |||     
T  39162896 ttggtcgaaatctctttgcactttgcaacatgtcgaaataaccaatctgccttgtcgaaaatataatcatgagttcgacaaaatatttcatttttggtgc 39162797  T
Q  101 taaca 105  Q
    |||||    
T  39162796 taaca 39162792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 5555679 - 5555577
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    ||||||||||||  |||  | ||| |||||||||||||||||||||||||||| ||||||| | ||| || |||||||||||||||||||||||| ||||    
T  5555679 ttggtcaaaatccatttgcattttacagcatgtcgaaataacacatctgccttgtcgaaaacataatcattagttcgaccaaatatttcatttttggtgt 5555580  T
Q  101 taa 103  Q
    |||    
T  5555579 taa 5555577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 35801858 - 35801756
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||||||||  |||||||| |||||||||||||| ||||| |||| ||||||||| |||  ||||||||| |||||||||||||||| ||||    
T  35801858 ttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatctaccttgtcgaaaatataatcgtgagttcgatcaaatatttcatttttggtgt 35801759  T
Q  101 taa 103  Q
    |||    
T  35801758 taa 35801756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 46611984 - 46612070
Alignment:
Q  20 actttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaacag 106  Q
    |||||| ||| |||||||||||| |||||||||||||||||| | ||| || |||||||||||||||||||||||| ||||||||||    
T  46611984 actttgtagcctgtcgaaataactcatctgccttatcgaaaacataatcataagttcgaccaaatatttcatttttagtgttaacag 46612070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 4947675 - 4947750
Alignment:
Q  20 actttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttt 95  Q
    |||| |||||||||| ||||||| |||||| ||| || |||||| ||||||||||||||| |||||||||||||||    
T  4947675 acttcgcagcatgtcaaaataactcatctgtcttgtcaaaaatataattatgagttcgacaaaatatttcattttt 4947750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 20506817 - 20506710
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||| ||||  |||||||||||||||||||||||||||||||||| ||||||| | ||| || |||||||||||||||||||||||| ||||    
T  20506817 ttggtcgaaatccctttgcactttgcagcatgtcgaaataacacatctgccttgtcgaaaacataatcattagttcgaccaaatatttcatttttggtgt 20506718  T
Q  101 taacagag 108  Q
    ||||||||    
T  20506717 taacagag 20506710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 247
Target Start/End: Complemental strand, 27596619 - 27596478
Alignment:
Q  104 cagagtccccccaaaatgttgtttctcgaaagagatgagaggaataacatttggaatcatatcaccaatttagagaaaacacttgatgacctcttttgaa 203  Q
    ||||| ||||| |||||||||||||||||| |   |||||||||||||||||  ||||||  ||||||||||| |||||||||| |||||||||||||||    
T  27596619 cagagacccccaaaaatgttgtttctcgaagggagtgagaggaataacatttttaatcatgccaccaatttagggaaaacactt-atgacctcttttgaa 27596521  T
Q  204 aacttacccaaatttttagagaagatggtttcggcttcatcatc 247  Q
    |||||| ||||| |||| ||||||||| ||||| ||||||||||    
T  27596520 aacttagccaaa-ttttggagaagatgatttcgacttcatcatc 27596478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 21946854 - 21946750
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||| ||||  ||| || |||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||    
T  21946854 ttggtcgaaatccctttacactctgaagcatgtcgaaataacccatctgccttatcgaaaacataatcatgagttcgaccaaatatttcatttttggtgt 21946755  T
Q  101 taaca 105  Q
    |||||    
T  21946754 taaca 21946750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 7015053 - 7015147
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttt 95  Q
    |||||||||||| ||||  ||||||||||||||||||||||| |||||||||| ||||||||| ||| |||| |||||||||||| ||| |||||    
T  7015053 ttggtcaaaatccctttacactttgcagcatgtcgaaataacccatctgccttgtcgaaaatataatcatgaattcgaccaaataattccttttt 7015147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 31813244 - 31813140
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||||||||  |||||||| |||||||||||||| ||| |||||| ||||||| | |||  ||||||||||||||||||||||||||  |||    
T  31813244 ttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatttgccttgtcgaaaacataatcgtgagttcgaccaaatatttcatttttgatgt 31813145  T
Q  101 taaca 105  Q
    |||||    
T  31813144 taaca 31813140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10735344 - 10735431
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatattt 88  Q
    |||||| |||||||||| ||||||||||||||| |||||||| |||||||||| || |||||| ||| |||| ||| |||||||||||    
T  10735344 ttggtcgaaatctctttgtactttgcagcatgttgaaataactcatctgccttgtcaaaaatataatcatgatttcaaccaaatattt 10735431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 1494355 - 1494277
Alignment:
Q  77 gaccaaatatttcattttttgtgttaacagagtccccccaaaatgttgtttctcgaaagagatgagaggaataacattt 155  Q
    |||||| ||||| ||||||||| ||||||||| || ||||||||||||||| |||||||| | ||||||||||||||||    
T  1494355 gaccaagtattttattttttgtattaacagaggccacccaaaatgttgtttttcgaaagaaaggagaggaataacattt 1494277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 33270832 - 33270738
Alignment:
Q  10 atctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaaca 105  Q
    ||||||||  |||||| |||||||||||| ||| ||| || ||| |||||| || ||| |||||||||||||| ||||| |||||| || ||||||    
T  33270832 atctctttgcactttggagcatgtcgaaagaacccatatggcttgtcgaaa-tataatcatgagttcgaccaagtattttatttttggtattaaca 33270738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 39944908 - 39944990
Alignment:
Q  21 ctttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaa 103  Q
    |||||||||||||||||||||| |||||||||| ||||||| | ||| ||||||||||||||||||||||||||| |||||||    
T  39944908 ctttgcagcatgtcgaaataacccatctgccttgtcgaaaacataatcatgagttcgaccaaatatttcatttttggtgttaa 39944990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 43543786 - 43543857
Alignment:
Q  20 actttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcat 91  Q
    |||||||||| |||||||||||| |||||||||| ||||  ||||||| | |||||||||||||||||||||    
T  43543786 actttgcagcctgtcgaaataactcatctgccttgtcgacgatagaatcaggagttcgaccaaatatttcat 43543857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 49237566 - 49237486
Alignment:
Q  8 aaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatattt 88  Q
    |||||||||| || ||||||||||||||||||||| ||||| ||||||| | |||| ||| |||| ||||||| |||||||    
T  49237566 aaatctctttgtattttgcagcatgtcgaaataactcatctaccttatcaagaatataatcatgatttcgaccgaatattt 49237486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 1255758 - 1255685
Alignment:
Q  82 aatatttcattttttgtgttaacagagtccccccaaaatgttgtttctcgaaagagatgagaggaataacattt 155  Q
    ||||||| | |||| || || |||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  1255758 aatattttaattttggtatttacagaggcccccaaaaatgttgtttctcgaaagaaatgtgaggaataacattt 1255685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 25484820 - 25484923
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| |||| |||||  |||||||||||||||||||||||  ||| | ||||||| ||| | ||| |||| ||||||||||||||  ||||||||| |    
T  25484820 ttggtcgaaatttctttacactttgcagcatgtcgaaataacctatcagacttatcg-aaacataatcatgatttcgaccaaatattatattttttgtat 25484918  T
Q  101 taaca 105  Q
    |||||    
T  25484919 taaca 25484923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 49021438 - 49021504
Alignment:
Q  20 actttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatat 86  Q
    |||||||||| |||||||| |||| |||||||||||| |||| | ||| || |||||||||||||||    
T  49021438 actttgcagcctgtcgaaaaaacatatctgccttatcaaaaacataatcattagttcgaccaaatat 49021504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 11299 - 11403
Alignment:
Q  1 ttggtcaaaatctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgt 100  Q
    |||||| ||||| |||| |||||||||||||||||||||||  |||||||||| || |||| | |||  |||||||||||||||||||||||||| ||||    
T  11299 ttggtcgaaatccctttgtactttgcagcatgtcgaaataatccatctgccttgtcaaaaacataatcgtgagttcgaccaaatatttcatttttggtgt 11398  T
Q  101 taaca 105  Q
    |||||    
T  11399 taaca 11403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 197773 - 197678
Alignment:
Q  10 atctctttttactttgcagcatgtcgaaataacacatctgccttatcgaaaatagaattatgagttcgaccaaatatttcattttttgtgttaacaga 107  Q
    ||||||||  ||||||||||||||||||| ||| ||||||  || |||||| || ||| |||| ||||||||||||||| |||||| || ||||||||    
T  197773 atctctttacactttgcagcatgtcgaaagaacccatctgg-ttgtcgaaa-tataatcatgacttcgaccaaatattttatttttggtattaacaga 197678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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