View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19572_low_11 (Length: 223)
Name: NF19572_low_11
Description: NF19572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19572_low_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 46820164 - 46820386
Alignment:
| Q |
1 |
caacaaacacaatatacatatctttaccattgctctccgacttttctttccacttgttttccacaaccaaattagccaccactaaattaacttgtaacct |
100 |
Q |
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| T |
46820164 |
caacaaacacaatatacatatctttaccattgctctccgacttttctttccacttgttttccacaaccaaattagccaccactaaattaacttgtaacct |
46820263 |
T |
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| Q |
101 |
gaacaaatctctaattcctttttcctccatggattcctccctacatggaaccatagccatcacaacatcgagatctttgtaattcgccaaacttggcata |
200 |
Q |
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| T |
46820264 |
gaacaaatctctaattcctttttcctccatggattcctccctacatggaaccatagccatcacaacatcgagatctttgtaattcgccaaacttggcata |
46820363 |
T |
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| Q |
201 |
ggcatgtttggacatttaggctc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
46820364 |
ggcatgtttggacatttaggctc |
46820386 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 36881686 - 36881641
Alignment:
| Q |
58 |
tttccacaaccaaattagccaccactaaattaacttgtaacctgaa |
103 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
36881686 |
tttccactaccaaattagccaccaccaaattaacttgtaacctgaa |
36881641 |
T |
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