View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19572_low_4 (Length: 353)
Name: NF19572_low_4
Description: NF19572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19572_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 49 - 306
Target Start/End: Original strand, 10378862 - 10379119
Alignment:
| Q |
49 |
ctacactaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaag |
148 |
Q |
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| T |
10378862 |
ctacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaag |
10378961 |
T |
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| Q |
149 |
aatgttaggcttgtttgcaagaattgaagttccttccttaccactgagagaatccttcaaataaaggatactagatgccaaaatctattgttgtttgtct |
248 |
Q |
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| T |
10378962 |
aatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttgtttgtgt |
10379061 |
T |
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| Q |
249 |
ttggtgctctcatacaacccttttctgatttagattatcatgttaacatgatacatgc |
306 |
Q |
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| T |
10379062 |
ttggtgctctcatacaacccttttctgatttagattatcatgttaacatgatacatgc |
10379119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 10367306 - 10367500
Alignment:
| Q |
18 |
caaagaaatgtattgaaaaagtgcatgaaatctacactaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtg |
117 |
Q |
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| T |
10367306 |
caaagaaatgtattgaaaaagtgcatgaaatctacacaaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtg |
10367405 |
T |
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| Q |
118 |
tttggatcgtcttccattcgaaggtctcaagaatgttaggcttgtttgcaagaattgaagttccttccttaccactgagagaatccttcaaataa |
212 |
Q |
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| T |
10367406 |
tttggatcgtcttccattcgaaggtctcaagaatgttaggcttgtttgcaagaattggagttccttccttaccactgagagaatccttcaaataa |
10367500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 43657570 - 43657687
Alignment:
| Q |
66 |
ttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaagaatgttaggcttgtttg |
165 |
Q |
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| T |
43657570 |
ttgaagtaaagtccgaaatctttcttcttcccgatggtattcttgaaatgtgtttggatcgtgttgcatgcgaaagtctcgataatgctaggcttgtgtg |
43657669 |
T |
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| Q |
166 |
caagaattgaagttcctt |
183 |
Q |
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| T |
43657670 |
caaaaaatggagttcctt |
43657687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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