View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19572_low_9 (Length: 255)
Name: NF19572_low_9
Description: NF19572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19572_low_9 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 43999030 - 43998793
Alignment:
| Q |
1 |
aggttataaaaattggtaagtaatgaaagaaatcaagacatgttatcttgaagttagcattcactggataaaattgattcattatttggcatacaaattc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43999030 |
aggttataaaaattggtaagtaatgaaagaaatcaagacatgttatcttgaagttagcattcactggataatattgattcattatttggcatacaaattc |
43998931 |
T |
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| Q |
101 |
aannnnnnn-acttctaattttgcagttagcgttcactggatcgacagacactggaaaaactgtacttgagctggctgcaagaagcaatcttaagccagt |
199 |
Q |
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| T |
43998930 |
aattttttttacttctaattttgcagttagcgttcactggatcaacagacactggaaaaactgtacttgagctggctgcaagaagcaatcttaagccagt |
43998831 |
T |
|
| Q |
200 |
gacattagaacttggagggaaatcgcctttcattgtct |
237 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
43998830 |
gacattagaacttggagggaaatcgcctttcattgtct |
43998793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 18195155 - 18195050
Alignment:
| Q |
132 |
ttcactggatcgacagacactggaaaaactgtacttgagctggctgcaagaagcaatcttaagccagtgacattagaacttggagggaaatcgcctttca |
231 |
Q |
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|||||| ||| ||| |||| |||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18195155 |
ttcactagattgacggacattggaaaaactatacttcaactggctgcaagaagcaatcttaagccgatgacattagaacttggagggaaatcgcctttca |
18195056 |
T |
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| Q |
232 |
ttgtct |
237 |
Q |
| |
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|||||| |
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| T |
18195055 |
ttgtct |
18195050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 6650467 - 6650254
Alignment:
| Q |
9 |
aaaattggtaagtaatgaaagaaatcaagacatgttatcttgaagttagcattcactggataaaattgattcattatttggcatacaaattcaannnnnn |
108 |
Q |
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||||||| |||||||||||||| |||||||||| ||||| |||| ||||||||||| ||||||||| |||||||| ||| | |||||||||| | |
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| T |
6650467 |
aaaattgataagtaatgaaagatatcaagacatattatcctgaacttagcattcacgggataaaatcgattcattgtttagtatacaaattccatttttt |
6650368 |
T |
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| Q |
109 |
nacttctaattttgcagttagcgttcactggatcgacagacactggaaaaactgtacttgagctggctgcaagaagcaatcttaagccagtgacattaga |
208 |
Q |
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|| | |||||||||||||||| |||||| || || |||||| |||||||||||||||| || ||||||| ||| |||||||||||| | |||||||| |
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| T |
6650367 |
tacatataattttgcagttagcattcactacattgatggacactagaaaaactgtacttgaactagctgcaataagtaatcttaagccaataacattaga |
6650268 |
T |
|
| Q |
209 |
acttggagggaaat |
222 |
Q |
| |
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|||||||||||||| |
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| T |
6650267 |
acttggagggaaat |
6650254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 6730833 - 6730620
Alignment:
| Q |
9 |
aaaattggtaagtaatgaaagaaatcaagacatgttatcttgaagttagcattcactggataaaattgattcattatttggcatacaaattcaannnnnn |
108 |
Q |
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||||||| |||||||||||||| |||||||||| ||||| |||| ||||||||||| ||||||||| |||||||| ||| | |||||||||| | |
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| T |
6730833 |
aaaattgataagtaatgaaagatatcaagacatattatcctgaacttagcattcacgggataaaatcgattcattgtttagtatacaaattccatttttt |
6730734 |
T |
|
| Q |
109 |
nacttctaattttgcagttagcgttcactggatcgacagacactggaaaaactgtacttgagctggctgcaagaagcaatcttaagccagtgacattaga |
208 |
Q |
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|| | |||||||||||||||| |||||| || || |||||| |||||||||||||||| || ||||||| ||| |||||||||||| | |||||||| |
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| T |
6730733 |
tacatataattttgcagttagcattcactacattgatggacactagaaaaactgtacttgaactagctgcaataagtaatcttaagccaataacattaga |
6730634 |
T |
|
| Q |
209 |
acttggagggaaat |
222 |
Q |
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|||||||||||||| |
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| T |
6730633 |
acttggagggaaat |
6730620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 285891 - 285996
Alignment:
| Q |
132 |
ttcactggatcgacagacactggaaaaactgtacttgagctggctgcaagaagcaatcttaagccagtgacattagaacttggagggaaatcgcctttca |
231 |
Q |
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|||||| ||| ||| |||| |||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
285891 |
ttcactagattgacggacattggaaaaactatacttcaactggctgcaagaagcaatcttaagccgatgacattagaacttggagggaaatcgcctttca |
285990 |
T |
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| Q |
232 |
ttgtct |
237 |
Q |
| |
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|||||| |
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| T |
285991 |
ttgtct |
285996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 292247 - 292352
Alignment:
| Q |
132 |
ttcactggatcgacagacactggaaaaactgtacttgagctggctgcaagaagcaatcttaagccagtgacattagaacttggagggaaatcgcctttca |
231 |
Q |
| |
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|||||| ||| ||| |||| |||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
292247 |
ttcactagattgacggacattggaaaaactatacttcaactggctgcaagaagcaatcttaagccgatgacattagaacttggagggaaatcgcctttca |
292346 |
T |
|
| Q |
232 |
ttgtct |
237 |
Q |
| |
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|||||| |
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|
| T |
292347 |
ttgtct |
292352 |
T |
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