View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19573_high_2 (Length: 466)
Name: NF19573_high_2
Description: NF19573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19573_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 41380624 - 41380983
Alignment:
| Q |
16 |
caagaacaatacatatctgtaatatatggagcaaatattaaacatgtgctta----taacattattnnnnnnncttagagaaaaaatgcaataattaaag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
41380624 |
caagaacaatacatatctgtaatatatggagcaaatattaaacatgtgcttaattataacattattaaaaaaacttagagaaaaaatgcaataattaaag |
41380723 |
T |
|
| Q |
112 |
atacctacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattagaatgaaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41380724 |
atacctacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttaatagaatgaaaa |
41380823 |
T |
|
| Q |
212 |
gatgagtaagattatgattatctaagaaaatttagtaattatgtttacaatttctcatggcttacaaaatatgttgttggagcaaaagcaaatcctccaa |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380824 |
gatgagtaagattatgattatctaagaaaatttagtaattatatttacaatttctcatggcttacaaaatatgttgttggagcaaaagcaaatcctccaa |
41380923 |
T |
|
| Q |
312 |
aaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctg |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380924 |
aaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctg |
41380983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 371
Target Start/End: Complemental strand, 43855252 - 43855153
Alignment:
| Q |
272 |
cttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctg |
371 |
Q |
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||||||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||||| ||||||||||| ||| | | |||||||| ||||||| |
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| T |
43855252 |
cttacaaaatatgttgtgggagcaaatgccaatcctccaaaaaatccaaggagagcaccaaagaatgggaaggttatgcccacaaacattgtgaatgctg |
43855153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 43856685 - 43856729
Alignment:
| Q |
271 |
gcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaa |
315 |
Q |
| |
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||||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
43856685 |
gcttacaaagtatgtcattggagcaaaaacaaatcctccaaaaaa |
43856729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 7970186 - 7970554
Alignment:
| Q |
16 |
caagaacaatacatatctgtaatatatggagcaaatattaaacatgtgcttataacattattnnnnnnn-------cttagagaaaaaa----tgcaata |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| | ||||| |
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| T |
7970186 |
caagaacaatacatatctgtaatatatggagcaaatattaaacatgtgcttataacattaataaattattcaagaacttaaagaaaaaaaaaatacaata |
7970285 |
T |
|
| Q |
105 |
attaaagatacctacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattaga |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7970286 |
attaaagatacctacccaattaatccaccaagataagctgaatctttttggtttgtagagtttaagccacatgatacatggaagctgaaaatttaataga |
7970385 |
T |
|
| Q |
205 |
atgaaaagatgagtaagattatgattat-ctaagaaaatttagtaattatgtttacaa-tttctcatggcttacaaaatatgttgttggagcaaaagcaa |
302 |
Q |
| |
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|||||||| | || |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
7970386 |
atgaaaagttaagcaagattatgattatcctaagaaaatttagtaattatatttacaattttctcatggcttacaaaatatgttgttggcgcaaaagcaa |
7970485 |
T |
|
| Q |
303 |
atcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctg |
371 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
7970486 |
atcctccaaaaaatcctaagaggccaccgaaaaatgggaaggtaatggcaatgaacattgttaatgctg |
7970554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 8043523 - 8043155
Alignment:
| Q |
16 |
caagaacaatacatatctgtaatatatggagcaaatattaaacatgtgcttat-aacatta-------ttnnnnnnncttagag----aaaaaatgcaat |
103 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||| || ||||||| |||| |
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|
| T |
8043523 |
caagaacaacacatatctgtaacatatggagcaaatattaaacatgtgcttataaacattaataaattattcaagaacttaaagaagaaaaaaatacaat |
8043424 |
T |
|
| Q |
104 |
aattaaagatacctacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttattag |
203 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
8043423 |
aattaaagatgcctacccaattaatccaccaagacaagctgaatctctttggtttgtagagtttaagccacacaatacatggaagctgaaaatttaatag |
8043324 |
T |
|
| Q |
204 |
aatgaaaagatgagtaagattatgattat-ctaagaaaatttagtaattatgtttacaatttctcatggcttacaaaatatgttgttggagcaaaagcaa |
302 |
Q |
| |
|
||||||||| | || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
8043323 |
aatgaaaagttaagcaagattatgattatcctaagaaaatttagtaattacatttacaatttctcatggcttacataatatgttgctggagcaaaagcaa |
8043224 |
T |
|
| Q |
303 |
atcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctg |
371 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||||||||||||||||||| | ||||||||||||||||| |
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| T |
8043223 |
atcctccaaaaaatcctaagaggccaccgaaaaatgggaaggtaatggcaatgaacattgttaatgctg |
8043155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 87 - 371
Target Start/End: Complemental strand, 8033503 - 8033219
Alignment:
| Q |
87 |
tagagaaaaaatgcaataattaaagatacctacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatgga |
186 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| || | |||||||||||||||||| |
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|
| T |
8033503 |
tagagaaaacaaacaataattaaagatacctacccaattagtccaccaagagaagctgaatctctttggtttgtaaaggattagccacatgatacatgga |
8033404 |
T |
|
| Q |
187 |
agctgaaaatttattagaatgaaaagatgagtaagattatgattatc-taagaaaatttagtaattatgtttacaatttctcatggcttacaaaatatgt |
285 |
Q |
| |
|
|||||||| | || || |||||||||||||| || |||||||| ||| ||||||||| ||| ||||| |||||||||| |||||||||||||||||||| |
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|
| T |
8033403 |
agctgaaa-tgtaatataatgaaaagatgagcaaaattatgataatcctaagaaaatccagtgattatatttacaatttttcatggcttacaaaatatgt |
8033305 |
T |
|
| Q |
286 |
tgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctg |
371 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||| ||||| || | ||||||||| ||||||| |
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|
| T |
8033304 |
tgttggagcaaaagcgaatcctccaaaaaatcctagaaggccaccgaaaaatgggaatgtaatagcaatgaacattgtgaatgctg |
8033219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 7977223 - 7977326
Alignment:
| Q |
268 |
atggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaat |
367 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||| || || |||||| | ||||||||||| ||||| || | ||||||||| ||| |
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|
| T |
7977223 |
atggcttacaaagtatgttgttggagcaaaagcaaaccctccaaaaaaccctagaaggccatcgaaaaatgggaatgtaatagcaatgaacattgtgaat |
7977322 |
T |
|
| Q |
368 |
gctg |
371 |
Q |
| |
|
|||| |
|
|
| T |
7977323 |
gctg |
7977326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 7976908 - 7976993
Alignment:
| Q |
112 |
atacctacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatt |
197 |
Q |
| |
|
|||| |||||||||| |||||| ||||||| |||| | |||| ||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
7976908 |
atacatacccaattagcccaccatgacaagccgaattttcttggtttgtagattgaaagccacatgatacatggaagctgaaaatt |
7976993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 336
Target Start/End: Original strand, 14197281 - 14197346
Alignment:
| Q |
271 |
gcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaa |
336 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||| || || ||||| ||||| |
|
|
| T |
14197281 |
gcttacaaagtatgttgttggagcaaaagcaaatccaccaaaaaatcctagtagaccaccgaaaaa |
14197346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 14197141 - 14197211
Alignment:
| Q |
129 |
ccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaattta |
199 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| | ||||||||| || ||||| ||||||||||||| |
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|
| T |
14197141 |
ccaccaagacaagctgaatctccttggtttgtagattgcaagccacattatgcatggtagctgaaaattta |
14197211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 34410630 - 34410575
Alignment:
| Q |
132 |
ccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaa |
187 |
Q |
| |
|
||||||||||| |||||||| || ||||| ||||||||||| ||||||||||||| |
|
|
| T |
34410630 |
ccaagacaagccaaatctcttaggtttgtaaagtttaagccatatgatacatggaa |
34410575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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