View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19573_high_5 (Length: 394)
Name: NF19573_high_5
Description: NF19573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19573_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 2 - 375
Target Start/End: Original strand, 32601006 - 32601375
Alignment:
| Q |
2 |
aaaatgaagaaaataagtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggccc |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32601006 |
aaaatgaagaaaataagtgagttatcatattaattttacctattccagttatcttcaatatctcctgttgttctccaactatttcccacacttttggccc |
32601105 |
T |
|
| Q |
102 |
atgtagctggatcttcccatcccctatgtttcaaaaaagaaattagaatgaaatagaaaatgaaatatcaattatgtatgagaaacattatcaccaatcc |
201 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601106 |
atgtagcaggatcttcccatcccctatgtttcaaaaaagaaattataatgaaatataaaatgaaatatcaattatgtatgagaaacattatcaccaatcc |
32601205 |
T |
|
| Q |
202 |
agctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtggatacctgatttacacaacgtatgaaactagt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601206 |
agctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtggatacctgatttacacaacgtatgaaactagt |
32601305 |
T |
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| Q |
302 |
aagtactattttttacaaaatactaattaagtatgttgatatacctattttcatttgaagaaaataaattaaat |
375 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32601306 |
aagtactattttttacaaaat----attaagtatgttgatatacctattttaatttgaagaaaataaattaaat |
32601375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 32590551 - 32590906
Alignment:
| Q |
18 |
gtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttc |
117 |
Q |
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|||| |||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32590551 |
gtgaattatcatattaattttacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttc |
32590650 |
T |
|
| Q |
118 |
ccatcccctatgtttcaaaaaagaaattagaatgaaatagaaaatgaaatatcaattatgtatgagaaacattatcaccaatccagctcaccattcacac |
217 |
Q |
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| |||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |
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| T |
32590651 |
ctttcccctatgtttcaaaaaagcaagtataataaaatagaaaatgaaatatcaattatgtatgagaaacattatcactaattcaactcaccattcacac |
32590750 |
T |
|
| Q |
218 |
atagagaagaagattggccttccagattttaataaggcttcactcattggtggatacctgatttacacaacgtatgaaactagtaagtacta--tttttt |
315 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
32590751 |
acagagaagaagattggccttccagattttaataaggcttcactcattggtggatacctgatttacacaacgtatgaaactagtgagtactatttttttt |
32590850 |
T |
|
| Q |
316 |
acaaaatactaattaagtatgttgatatacctattttcatttgaagaaaataaattaaat |
375 |
Q |
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||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||| |
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| T |
32590851 |
acaaaat----attaagtatgtagatatacctatttgcatttgaagaacataaattaaat |
32590906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 24883258 - 24883186
Alignment:
| Q |
204 |
ctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtggatacct |
276 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||| || ||| ||||||| |||| |||| ||||| |
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| T |
24883258 |
ctcaccattcacacaaagagtagaagattggccttccagattgtactaaagcttcacccattcgtgggtacct |
24883186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 24883434 - 24883380
Alignment:
| Q |
39 |
acctattccagttatcttcaatatctccagttgttctccaactatttcccacact |
93 |
Q |
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|||||| ||| |||||||| |||||| |||||||||||||||||||||||||| |
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| T |
24883434 |
acctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact |
24883380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 39 - 281
Target Start/End: Original strand, 34578391 - 34578633
Alignment:
| Q |
39 |
acctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttcccatcccctatgtttcaaaaa |
138 |
Q |
| |
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|||| ||||| |||||||| ||||| || || |||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||| | ||| |
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| T |
34578391 |
acctcttccaattatcttctatatcacccgtggttctccaactatttcccacacttttggcccacgttgcaggatcttcccatcccctgaattttagaaa |
34578490 |
T |
|
| Q |
139 |
agaaattagaatgaaatagaaaatgaaatatcaattatgtatgagaaacattatcaccaatccagctcaccattcacacatagagaagaagattggcctt |
238 |
Q |
| |
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|||| | || ||||||||||||||||||| |||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||| |
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| T |
34578491 |
agaattaagtgagaaatagaaaatgaaatattgtttatgtatgagaaacaccgcgatcaattcaactcaccattcacacatagagaagaagattggcctt |
34578590 |
T |
|
| Q |
239 |
ccagattttaataaggcttcactcattggtggatacctgattt |
281 |
Q |
| |
|
|| || |||||||| ||||||||||||||||||||||| |||| |
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| T |
34578591 |
ccggagtttaataaagcttcactcattggtggatacctaattt |
34578633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 37 - 276
Target Start/End: Original strand, 34594089 - 34594332
Alignment:
| Q |
37 |
ttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttcccatcccctatgtttcaaa |
136 |
Q |
| |
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|||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| || | |
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| T |
34594089 |
ttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatgttccaca |
34594188 |
T |
|
| Q |
137 |
aaagaaattagaatgaaatagaaaatg---aaatatcaattatgtatgagaaacattatcaccaa-tccagctcaccattcacacatagagaagaagatt |
232 |
Q |
| |
|
||| | || | | |||||| || ||||| | | ||||||||||||||| || || | || |||||||||||||||| |||||||||||| |
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| T |
34594189 |
aaattatgtaaaggctagtagaaattggaataatattattcatgtatgagaaacatcatatttaatttcaactcaccattcacacattgagaagaagatt |
34594288 |
T |
|
| Q |
233 |
ggccttccagattttaataaggcttcactcattggtggatacct |
276 |
Q |
| |
|
| |||||||||||| | |||||||||||||||||| || ||||| |
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| T |
34594289 |
gaccttccagatttcattaaggcttcactcattggcgggtacct |
34594332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 306
Target Start/End: Original strand, 35124249 - 35124351
Alignment:
| Q |
204 |
ctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtggatacctgatttacacaacgtatgaaactagtaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||||| || |||||||||| ||| |
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| T |
35124249 |
ctcaccattcacacatagagaagaagattggtcttccagagtttaacaaggcttcactcattggtgggtacctaatttacaaaatttatgaaactaataa |
35124348 |
T |
|
| Q |
304 |
gta |
306 |
Q |
| |
|
||| |
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|
| T |
35124349 |
gta |
35124351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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