View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19573_high_8 (Length: 298)
Name: NF19573_high_8
Description: NF19573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19573_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 1029621 - 1029880
Alignment:
| Q |
16 |
aaaatttcaacatatttcatttgattacttcatccctattccttttttgtctcgagtcccataaatgactttattagcttccaacatctcttcacattgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1029621 |
aaaatttcaacatatttcatttgattacttcatccctattccttttttgtctcgagtcccataaatgactttattagcttccaacatctcttcacattgg |
1029720 |
T |
|
| Q |
116 |
atatacttattggccctttctagtagatggttgaagtcatgggttgctttgaggccaatactctcggtaaacttggtgtccttcaagagtcgtgaacgaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1029721 |
atatacttattggccctttctagtagatggttgaagtcatgggttgctttgaggccaatactctcggtaaacttggtgtccttcaagagtc--------- |
1029811 |
T |
|
| Q |
216 |
gtagatttgtcttcatcttgtcatcggcgtcgtccttcacttgtacgacctctttgttgaatctctcagtataatcta |
293 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1029812 |
------ttgtcttcatcttgtcatcgg---cgtccttcactcgtacgacctctttgttgaatctctcaatataatcta |
1029880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 1012395 - 1012434
Alignment:
| Q |
16 |
aaaatttcaacatatttcatttgattacttcatccctatt |
55 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
1012395 |
aaaatttcaacatatttcatttgattactacatctctatt |
1012434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University