View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19573_low_1 (Length: 491)
Name: NF19573_low_1
Description: NF19573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19573_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Original strand, 34818677 - 34819072
Alignment:
| Q |
11 |
gagagagaagaatgcatgaaagaaatcactgaagctgctagaaaatggggttttttccaagttgtgaatcatggagtttcacaagaggtgctaaagaaca |
110 |
Q |
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| T |
34818677 |
gagagagaagaatgcatgaaagaaatcactgaagctgctagaaaatggggttttttccaagttgtgaatcatggagtttcacaagaggtgctaaagaaca |
34818776 |
T |
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| Q |
111 |
tgcagtttgaagaaaaggaagtgttccgaacaccttttggaattaaatcacaagagaattttttgaacttgccttctagaacttataggtggggcaatgc |
210 |
Q |
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| T |
34818777 |
tgcagtttgaagaaaaggaagtgttccgaacaccttttggaattaaatcacaagagaattttttgaacttgccttctagaacttataggtggggcaacgc |
34818876 |
T |
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| Q |
211 |
ttctgccattaatccaaaacaacttatgtggtcagaagcattacacatgtttcttcctgatatagaaaaaatggaccaacacaaaagtttgaggtagata |
310 |
Q |
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| T |
34818877 |
ttctgccattaatccaaaacaacttatgtggtcagaagcattacacatatttcttcctgatatagaaaaaatggaccaacacaaaagtttgaggtagata |
34818976 |
T |
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| Q |
311 |
tatatctctttcatagttcttacaatgcattgttatcatcatgtgtgaatcttttgtatttaaggtaacatctatatatttgttaacctctaataa |
406 |
Q |
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| T |
34818977 |
tatatctctttcatagtttttacaatgcattgttatcatcatgtgtgaatcttttgtatttaaggtaacatctatatatttgttaatctctaataa |
34819072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 425 - 476
Target Start/End: Original strand, 34819092 - 34819143
Alignment:
| Q |
425 |
agatcaagtattgaagcctttgtaagagtagttaaccctctggcagagaact |
476 |
Q |
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| T |
34819092 |
agatcaagtattgaatcttttgtaaaagtagttacccctctggcagagaact |
34819143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 34847907 - 34847858
Alignment:
| Q |
14 |
agagaagaatgcatgaaagaaatcactgaagctgctagaaaatggggttt |
63 |
Q |
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| T |
34847907 |
agagaagagtgcatgaaagaaataagtgaagctgctagtaaatggggttt |
34847858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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